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LOCUS KM350760 2652 bp RNA linear VRL 13-DEC-2014
DEFINITION Simian immunodeficiency virus isolate 16M935.28Aug2012p5j19 from
USA envelope glycoprotein (env) gene, complete cds
ACCESSION KM350760
VERSION KM350760.1 GI:730225142
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2652)
Show all sequences for reference 1
AUTHORS Vaccari,M., Gordon,S.N., Fourati,S., Schifanella,L.,
Liyanage,N.P.M., Cameron,M., Keele,B.F., Shen,X., Tomaras,G.D.,
Billings,E., Rao,M., Chung,A.W., Dowell,K.G., Bailey-Kellogg,C.,
Brown,E.P., Ackerman,M.E., Vargas-Inchaustegui,D.A., Whitney,S.,
Doster,M.N., Binello,N., Pegu,P., Montefiori,D.C., Foulds,K.,
Quinn,D.S., Donaldson,M., Liang,F., Lore,K., Roederer,M.,
Koup,R.A., McDermott,A., Ma,Z.-M., Miller,C.J., Phan,T.B.,
Forthal,D.N., Blackburn,M., Caccuri,F., Bissa,M., Ferrari,G.,
Kalyanaraman,V., Ferrari,M.G., Thompson,D.V., Robert-Guroff,M.,
Ratto-Kim,S., Kim,J.H., Michael,N.L., Phogat,S., Barnett,S.W.,
Tartaglia,J., Venzon,D., Stablein,D.M., Alter,G., Sekaly,R.-P. and
Franchini,G.
TITLE Adjuvant-dependent innate and adaptive immune signatures of risk of
SIVmac251 acquisition.
JOURNAL Nat. Med.. 22(7); 762-70 (2016)
PUBMED 27239761
REFERENCE 2 (bases 1 to 2652)
Show all sequences for reference 2
AUTHORS Vaccari,M., Keele,B.F. and Franchini,G.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2014) AIDS and Cancer Virus Program, Frederick
National Lab, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 5.0
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2652
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="16M935.28Aug2012p5j19"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/note="SIVmac251"
gene 1..2652
/gene="env"
CDS 1..2652
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AIZ11461.1"
/db_xref="GI:730225143"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSATAAPTTTTKATSTKPIDMVNETSSCITHDNCT
GLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVI
QESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTW
FGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHS
QPVNDRPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTF
MWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKSKERHKRNYVPCHIRQIINTWHKVGK
NVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITP
IGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIV
QQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTT
VPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVF
GNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLARLRQGYRPVFSSPPSYFQQTY
IQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLTRLLTWLFSNCRTLLSRV
YQILQPILQRLSAALQRIREVLRTELTYLQYGWSYFHGAVQAGWRSATETLAGAWGDL
WETLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT 837 a 508 c 642 g 665 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc
61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cttggaggaa tgcgacaatt
121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat
181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gctttgatgc ttgggagaat
241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct
301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagacaaa
361 tggggattga caaaatcatc agcaacagca gcaccaacaa caacaacaaa ggcaacatca
421 acaaagccaa tagacatggt caatgagact agttcttgta taactcatga taattgcaca
481 ggcttggaac aagagcaaat gataggctgt aaattcaata tgacagggtt aaaaagagac
541 aagacaaagg agtacaatga aacttggtac tctacagatt tggtttgtga gcaagggaat
601 agcactgata atgaaagtag atgctacatg aatcactgta acacttctgt tatccaagag
661 tcttgtgaca aacattattg ggatactatt agatttaggt attgtgcacc tccaggttat
721 gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg ttctaaggtg
781 gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt tggctttaat
841 ggaactagag cagaaaatag aacttatatt tactggcatg gtagagataa taggactata
901 attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg aaataagaca
961 gttttaccag tcaccattat gtctggattg gttttccact cacaaccagt caatgatagg
1021 ccaaatcagg catggtgttg gtttggagga aattggaagg atgcaataaa agaggtgaag
1081 cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa aatcaatttg
1141 acggctccta gaggaggaga tccggaagtt accttcatgt ggacaaattg cagaggagag
1201 ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa tctaactcta
1261 actacccaga agtcaaagga acggcataaa aggaattacg tgccatgtca tattagacaa
1321 ataatcaaca cttggcataa agtaggcaaa aatgtttatt tgcctccaag agagggagac
1381 ctcacgtgta actccacagt gaccagtctc atagcaaaca tagattggac tgatggaaac
1441 caaactaata tcaccatgag tgcagaggtg gcagaactgt atcgattgga attgggagat
1501 tataaattag tagagatcac tccaattggc ttggccccca cagatgtgaa gaggtacact
1561 actggtggca cctcaagaaa taaaagaggg gtctttgtgc tagggttctt gggttttctc
1621 gcaacggcag gttctgcaat gggcgcggcg tcgttgacgc tgaccgctca gtcccggact
1681 ttattggctg ggatagtgca gcaacagcaa cagctgttgg acgtggtcaa gagacaacaa
1741 gaattgttgc gactgaccgt ctggggaaca aagaacctcc agactagggt cactgccatc
1801 gagaagtact taaaggacca ggcgcagctg aatgcttggg gatgtgcgtt tagacaagtc
1861 tgccacacta ctgtaccatg gccaaatgca agtctaacac cagattggaa caatgacact
1921 tggcaagagt gggagcgaaa ggttgacttc ttggaggaaa atataacggc ccttctagaa
1981 gaggcacaaa ttcaacaaga gaagaacatg tatgaattac aaaagctgaa tagctgggat
2041 gtgtttggca attggtttga ccttgcttct tggataaagt atatacaata tggagtttat
2101 atagttgtag gagtaatact gttaaggata gtgatctata tagtacaaat gctagctagg
2161 ttaaggcagg ggtataggcc agtgttctct tccccaccct cttatttcca gcagacctat
2221 atccaacagg acccggcact gccaaccaga gaaggcaaag aaggagacgg tggagaaggc
2281 ggtggcaaca gctcctggcc ttggcagata gaatatattc atttcctgat ccgccaactg
2341 acacgcctct tgacttggct attcagcaac tgcagaacct tgctatcgag agtataccag
2401 atcctccaac caatactcca gaggctctct gcggccctac agagaattcg agaagtcctc
2461 aggactgaac tgacctacct acaatatggg tggagctatt tccatggggc ggtccaagcc
2521 ggctggagat ctgcgacaga gactcttgcg ggcgcgtggg gagacttatg ggagactctt
2581 aggagaggtg gaagatggat cctcgcaatc cctaggagga ttaggcaagg gcttgagctc
2641 actctcttgt ga
//
last modified: Tue May 31 10:56 2022