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HIV Sequence Database



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LOCUS	    KM350760		    2652 bp    RNA     linear	VRL 13-DEC-2014
DEFINITION  Simian immunodeficiency virus isolate 16M935.28Aug2012p5j19 from
	    USA envelope glycoprotein (env) gene, complete cds
ACCESSION   KM350760
VERSION     KM350760.1 GI:730225142
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2652)
            Show all sequences for reference 1
  AUTHORS   Vaccari,M., Gordon,S.N., Fourati,S., Schifanella,L.,
	    Liyanage,N.P.M., Cameron,M., Keele,B.F., Shen,X., Tomaras,G.D.,
	    Billings,E., Rao,M., Chung,A.W., Dowell,K.G., Bailey-Kellogg,C.,
	    Brown,E.P., Ackerman,M.E., Vargas-Inchaustegui,D.A., Whitney,S.,
	    Doster,M.N., Binello,N., Pegu,P., Montefiori,D.C., Foulds,K.,
	    Quinn,D.S., Donaldson,M., Liang,F., Lore,K., Roederer,M.,
	    Koup,R.A., McDermott,A., Ma,Z.-M., Miller,C.J., Phan,T.B.,
	    Forthal,D.N., Blackburn,M., Caccuri,F., Bissa,M., Ferrari,G.,
	    Kalyanaraman,V., Ferrari,M.G., Thompson,D.V., Robert-Guroff,M.,
	    Ratto-Kim,S., Kim,J.H., Michael,N.L., Phogat,S., Barnett,S.W.,
	    Tartaglia,J., Venzon,D., Stablein,D.M., Alter,G., Sekaly,R.-P. and
	    Franchini,G.
  TITLE     Adjuvant-dependent innate and adaptive immune signatures of risk of
	    SIVmac251 acquisition.
  JOURNAL   Nat. Med.. 22(7); 762-70 (2016)
  PUBMED    27239761
REFERENCE   2 (bases 1 to 2652)
            Show all sequences for reference 2
  AUTHORS   Vaccari,M., Keele,B.F. and Franchini,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-AUG-2014) AIDS and Cancer Virus Program, Frederick
	    National Lab, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 5.0
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2652
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="16M935.28Aug2012p5j19"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /note="SIVmac251"
     gene	     1..2652
		     /gene="env"
     CDS	     1..2652
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AIZ11461.1"
		     /db_xref="GI:730225143"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSATAAPTTTTKATSTKPIDMVNETSSCITHDNCT
		     GLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVI
		     QESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTW
		     FGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHS
		     QPVNDRPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTF
		     MWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKSKERHKRNYVPCHIRQIINTWHKVGK
		     NVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITP
		     IGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIV
		     QQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTT
		     VPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVF
		     GNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLARLRQGYRPVFSSPPSYFQQTY
		     IQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLTRLLTWLFSNCRTLLSRV
		     YQILQPILQRLSAALQRIREVLRTELTYLQYGWSYFHGAVQAGWRSATETLAGAWGDL
		     WETLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT	837 a	 508 c	  642 g    665 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc 
      61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cttggaggaa tgcgacaatt 
     121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat 
     181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gctttgatgc ttgggagaat 
     241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct 
     301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagacaaa 
     361 tggggattga caaaatcatc agcaacagca gcaccaacaa caacaacaaa ggcaacatca 
     421 acaaagccaa tagacatggt caatgagact agttcttgta taactcatga taattgcaca 
     481 ggcttggaac aagagcaaat gataggctgt aaattcaata tgacagggtt aaaaagagac 
     541 aagacaaagg agtacaatga aacttggtac tctacagatt tggtttgtga gcaagggaat 
     601 agcactgata atgaaagtag atgctacatg aatcactgta acacttctgt tatccaagag 
     661 tcttgtgaca aacattattg ggatactatt agatttaggt attgtgcacc tccaggttat 
     721 gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg ttctaaggtg 
     781 gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt tggctttaat 
     841 ggaactagag cagaaaatag aacttatatt tactggcatg gtagagataa taggactata 
     901 attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg aaataagaca 
     961 gttttaccag tcaccattat gtctggattg gttttccact cacaaccagt caatgatagg 
    1021 ccaaatcagg catggtgttg gtttggagga aattggaagg atgcaataaa agaggtgaag 
    1081 cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa aatcaatttg 
    1141 acggctccta gaggaggaga tccggaagtt accttcatgt ggacaaattg cagaggagag 
    1201 ttcctctact gtaaaatgaa ttggtttcta aattgggtag aagataggaa tctaactcta 
    1261 actacccaga agtcaaagga acggcataaa aggaattacg tgccatgtca tattagacaa 
    1321 ataatcaaca cttggcataa agtaggcaaa aatgtttatt tgcctccaag agagggagac 
    1381 ctcacgtgta actccacagt gaccagtctc atagcaaaca tagattggac tgatggaaac 
    1441 caaactaata tcaccatgag tgcagaggtg gcagaactgt atcgattgga attgggagat 
    1501 tataaattag tagagatcac tccaattggc ttggccccca cagatgtgaa gaggtacact 
    1561 actggtggca cctcaagaaa taaaagaggg gtctttgtgc tagggttctt gggttttctc 
    1621 gcaacggcag gttctgcaat gggcgcggcg tcgttgacgc tgaccgctca gtcccggact 
    1681 ttattggctg ggatagtgca gcaacagcaa cagctgttgg acgtggtcaa gagacaacaa 
    1741 gaattgttgc gactgaccgt ctggggaaca aagaacctcc agactagggt cactgccatc 
    1801 gagaagtact taaaggacca ggcgcagctg aatgcttggg gatgtgcgtt tagacaagtc 
    1861 tgccacacta ctgtaccatg gccaaatgca agtctaacac cagattggaa caatgacact 
    1921 tggcaagagt gggagcgaaa ggttgacttc ttggaggaaa atataacggc ccttctagaa 
    1981 gaggcacaaa ttcaacaaga gaagaacatg tatgaattac aaaagctgaa tagctgggat 
    2041 gtgtttggca attggtttga ccttgcttct tggataaagt atatacaata tggagtttat 
    2101 atagttgtag gagtaatact gttaaggata gtgatctata tagtacaaat gctagctagg 
    2161 ttaaggcagg ggtataggcc agtgttctct tccccaccct cttatttcca gcagacctat 
    2221 atccaacagg acccggcact gccaaccaga gaaggcaaag aaggagacgg tggagaaggc 
    2281 ggtggcaaca gctcctggcc ttggcagata gaatatattc atttcctgat ccgccaactg 
    2341 acacgcctct tgacttggct attcagcaac tgcagaacct tgctatcgag agtataccag 
    2401 atcctccaac caatactcca gaggctctct gcggccctac agagaattcg agaagtcctc 
    2461 aggactgaac tgacctacct acaatatggg tggagctatt tccatggggc ggtccaagcc 
    2521 ggctggagat ctgcgacaga gactcttgcg ggcgcgtggg gagacttatg ggagactctt 
    2581 aggagaggtg gaagatggat cctcgcaatc cctaggagga ttaggcaagg gcttgagctc 
    2641 actctcttgt ga
//
last modified: Tue May 31 10:56 2022


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