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LOCUS KM350735 2646 bp RNA linear VRL 13-DEC-2014
DEFINITION Simian immunodeficiency virus isolate 4p639.28Aug2012.p4k7 from USA
envelope glycoprotein (env) gene, complete cds
ACCESSION KM350735
VERSION KM350735.1 GI:730225092
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2646)
Show all sequences for reference 1
AUTHORS Vaccari,M., Gordon,S.N., Fourati,S., Schifanella,L.,
Liyanage,N.P.M., Cameron,M., Keele,B.F., Shen,X., Tomaras,G.D.,
Billings,E., Rao,M., Chung,A.W., Dowell,K.G., Bailey-Kellogg,C.,
Brown,E.P., Ackerman,M.E., Vargas-Inchaustegui,D.A., Whitney,S.,
Doster,M.N., Binello,N., Pegu,P., Montefiori,D.C., Foulds,K.,
Quinn,D.S., Donaldson,M., Liang,F., Lore,K., Roederer,M.,
Koup,R.A., McDermott,A., Ma,Z.-M., Miller,C.J., Phan,T.B.,
Forthal,D.N., Blackburn,M., Caccuri,F., Bissa,M., Ferrari,G.,
Kalyanaraman,V., Ferrari,M.G., Thompson,D.V., Robert-Guroff,M.,
Ratto-Kim,S., Kim,J.H., Michael,N.L., Phogat,S., Barnett,S.W.,
Tartaglia,J., Venzon,D., Stablein,D.M., Alter,G., Sekaly,R.-P. and
Franchini,G.
TITLE Adjuvant-dependent innate and adaptive immune signatures of risk of
SIVmac251 acquisition.
JOURNAL Nat. Med.. 22(7); 762-70 (2016)
PUBMED 27239761
REFERENCE 2 (bases 1 to 2646)
Show all sequences for reference 2
AUTHORS Vaccari,M., Keele,B.F. and Franchini,G.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2014) AIDS and Cancer Virus Program, Frederick
National Lab, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 5.0
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2646
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="4p639.28Aug2012.p4k7"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/note="SIVmac251"
gene 1..2646
/gene="env"
CDS 1..2646
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AIZ11436.1"
/db_xref="GI:730225093"
/translation="MGCLGNQLLIVILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIRPCV
KLSPLCITMRCNKSETDKWGLTKSSITTTAPTTPNTTSTKPIDMVNETSSCIAHNNCT
GLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSII
QESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTW
FGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHS
QPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTF
MWTNCRGEFLYCKMNWFLNWVEDRDLTTQRPKERHRRNYVPCHIRQIINTWHKVGKNV
YLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIG
LAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQ
QQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVP
WPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN
WFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQ
QDPALPTREGKEGDGGESGGNSSWPWQIEYIHLLIRQLIRLLTWLFSNCRTLLSRVYQ
ILQPILQRLSATLQRIREVLRTELTYLQYGWSYFQEAVQAGWRSATETLAGAWGDLWE
TLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT 839 a 507 c 638 g 662 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gtcatcttgc ttttaagtgt ctatgggatc
61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cctggaggaa tgcgacaatt
121 cccctcttct gtgcgaccaa gaatagggat acttggggaa caactcagtg cctaccagat
181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gttttgatgc ttgggagaat
241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaggcct
301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa
361 tggggattga caaaatcatc aataacaaca acagcaccaa caacaccaaa tacaacatca
421 acaaagccaa tagacatggt caatgagact agttcttgta tagctcataa taattgcaca
481 ggcttggaac aagagcaaat gataggctgt aaattcaaca tgacagggtt aaaaagagac
541 aagacaaagg agtacaatga aacttggtac tctacagatt tggtttgtga acaagggaat
601 agcactgata atgaaagtag atgctacatg aatcactgta acacttctat tatccaagag
661 tcttgtgaca agcattattg ggatactatt agatttaggt attgtgcacc tccaggttat
721 gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg ttctaaggtg
781 gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt tggctttaat
841 ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa taggactata
901 attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg aaataagaca
961 gttttgccag tcaccattat gtctggattg gttttccact cacaaccagt caatgagagg
1021 ccaaaccagg catggtgttg gtttggagga aattggaagg atgcaataaa agaggtgaag
1081 cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa aatcaatttg
1141 acggctccta gaggaggaga tccggaagtt accttcatgt ggacaaattg cagaggagag
1201 tttctctact gtaaaatgaa ttggtttcta aattgggtag aagataggga tctaactacc
1261 cagaggccaa aggaacggca tagaaggaat tacgtgccat gtcatattag acaaataatc
1321 aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg agacctcacg
1381 tgtaactcca cagtgaccag tctcatagca aacatagatt ggactgatgg aaaccaaact
1441 aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg agattataaa
1501 ttagtagaga tcactccaat tggcttggcc cccacagatg tgaagaggta cactactggt
1561 ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt tctcgcaacg
1621 gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg gactttattg
1681 gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca acaagaattg
1741 ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc catcgagaag
1801 tacttaaagg accaggcgca gctgaatgct tggggatgtg cgtttagaca agtctgccac
1861 actactgtac catggccaaa tgcaagtcta acaccagact ggaacaatga tacttggcaa
1921 gagtgggagc gaaaggttga cttcttggag gaaaatataa cagccctcct agaagaggca
1981 caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagctg ggatgtgttt
2041 ggcaattggt ttgaccttgc ttcttggata aggtatatac aatatggaat ttatatagtt
2101 gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc taagttaagg
2161 caggggtata ggccagtgtt ctcttcccca ccctcttatt tccagcagac ccatatccaa
2221 caggacccag cactgccaac cagagaaggc aaagaaggag acggtggaga aagcggtggc
2281 aacagctcct ggccttggca gatagaatac attcatctcc tgatccgcca actgatacgc
2341 ctcttgactt ggctattcag caactgcaga accttgctat cgagagtata ccagatcctc
2401 caaccaatac tccagaggct ctctgcgacc ctacagagaa ttcgagaagt cctcaggact
2461 gaactgacct acctacaata tgggtggagc tatttccagg aggcggtcca agccggctgg
2521 agatctgcga cagagactct tgcgggcgcg tggggagact tatgggagac tcttaggaga
2581 ggtggaagat ggatcctcgc aattcctagg aggattagac aagggcttga gctcactctc
2641 ttgtga
//
last modified: Tue May 31 10:56 2022