HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KM350735		    2646 bp    RNA     linear	VRL 13-DEC-2014
DEFINITION  Simian immunodeficiency virus isolate 4p639.28Aug2012.p4k7 from USA
	    envelope glycoprotein (env) gene, complete cds
ACCESSION   KM350735
VERSION     KM350735.1 GI:730225092
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2646)
            Show all sequences for reference 1
  AUTHORS   Vaccari,M., Gordon,S.N., Fourati,S., Schifanella,L.,
	    Liyanage,N.P.M., Cameron,M., Keele,B.F., Shen,X., Tomaras,G.D.,
	    Billings,E., Rao,M., Chung,A.W., Dowell,K.G., Bailey-Kellogg,C.,
	    Brown,E.P., Ackerman,M.E., Vargas-Inchaustegui,D.A., Whitney,S.,
	    Doster,M.N., Binello,N., Pegu,P., Montefiori,D.C., Foulds,K.,
	    Quinn,D.S., Donaldson,M., Liang,F., Lore,K., Roederer,M.,
	    Koup,R.A., McDermott,A., Ma,Z.-M., Miller,C.J., Phan,T.B.,
	    Forthal,D.N., Blackburn,M., Caccuri,F., Bissa,M., Ferrari,G.,
	    Kalyanaraman,V., Ferrari,M.G., Thompson,D.V., Robert-Guroff,M.,
	    Ratto-Kim,S., Kim,J.H., Michael,N.L., Phogat,S., Barnett,S.W.,
	    Tartaglia,J., Venzon,D., Stablein,D.M., Alter,G., Sekaly,R.-P. and
	    Franchini,G.
  TITLE     Adjuvant-dependent innate and adaptive immune signatures of risk of
	    SIVmac251 acquisition.
  JOURNAL   Nat. Med.. 22(7); 762-70 (2016)
  PUBMED    27239761
REFERENCE   2 (bases 1 to 2646)
            Show all sequences for reference 2
  AUTHORS   Vaccari,M., Keele,B.F. and Franchini,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-AUG-2014) AIDS and Cancer Virus Program, Frederick
	    National Lab, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 5.0
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2646
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="4p639.28Aug2012.p4k7"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /note="SIVmac251"
     gene	     1..2646
		     /gene="env"
     CDS	     1..2646
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AIZ11436.1"
		     /db_xref="GI:730225093"
		     /translation="MGCLGNQLLIVILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIRPCV
		     KLSPLCITMRCNKSETDKWGLTKSSITTTAPTTPNTTSTKPIDMVNETSSCIAHNNCT
		     GLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSII
		     QESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTW
		     FGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHS
		     QPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTF
		     MWTNCRGEFLYCKMNWFLNWVEDRDLTTQRPKERHRRNYVPCHIRQIINTWHKVGKNV
		     YLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIG
		     LAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQ
		     QQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVP
		     WPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN
		     WFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQ
		     QDPALPTREGKEGDGGESGGNSSWPWQIEYIHLLIRQLIRLLTWLFSNCRTLLSRVYQ
		     ILQPILQRLSATLQRIREVLRTELTYLQYGWSYFQEAVQAGWRSATETLAGAWGDLWE
		     TLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT	839 a	 507 c	  638 g    662 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gtcatcttgc ttttaagtgt ctatgggatc 
      61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cctggaggaa tgcgacaatt 
     121 cccctcttct gtgcgaccaa gaatagggat acttggggaa caactcagtg cctaccagat 
     181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gttttgatgc ttgggagaat 
     241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaggcct 
     301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa 
     361 tggggattga caaaatcatc aataacaaca acagcaccaa caacaccaaa tacaacatca 
     421 acaaagccaa tagacatggt caatgagact agttcttgta tagctcataa taattgcaca 
     481 ggcttggaac aagagcaaat gataggctgt aaattcaaca tgacagggtt aaaaagagac 
     541 aagacaaagg agtacaatga aacttggtac tctacagatt tggtttgtga acaagggaat 
     601 agcactgata atgaaagtag atgctacatg aatcactgta acacttctat tatccaagag 
     661 tcttgtgaca agcattattg ggatactatt agatttaggt attgtgcacc tccaggttat 
     721 gctttgctta gatgtaatga cacaaattat tcaggcttta tgcctaaatg ttctaaggtg 
     781 gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt tggctttaat 
     841 ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa taggactata 
     901 attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg aaataagaca 
     961 gttttgccag tcaccattat gtctggattg gttttccact cacaaccagt caatgagagg 
    1021 ccaaaccagg catggtgttg gtttggagga aattggaagg atgcaataaa agaggtgaag 
    1081 cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa aatcaatttg 
    1141 acggctccta gaggaggaga tccggaagtt accttcatgt ggacaaattg cagaggagag 
    1201 tttctctact gtaaaatgaa ttggtttcta aattgggtag aagataggga tctaactacc 
    1261 cagaggccaa aggaacggca tagaaggaat tacgtgccat gtcatattag acaaataatc 
    1321 aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg agacctcacg 
    1381 tgtaactcca cagtgaccag tctcatagca aacatagatt ggactgatgg aaaccaaact 
    1441 aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg agattataaa 
    1501 ttagtagaga tcactccaat tggcttggcc cccacagatg tgaagaggta cactactggt 
    1561 ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt tctcgcaacg 
    1621 gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg gactttattg 
    1681 gctgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca acaagaattg 
    1741 ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc catcgagaag 
    1801 tacttaaagg accaggcgca gctgaatgct tggggatgtg cgtttagaca agtctgccac 
    1861 actactgtac catggccaaa tgcaagtcta acaccagact ggaacaatga tacttggcaa 
    1921 gagtgggagc gaaaggttga cttcttggag gaaaatataa cagccctcct agaagaggca 
    1981 caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagctg ggatgtgttt 
    2041 ggcaattggt ttgaccttgc ttcttggata aggtatatac aatatggaat ttatatagtt 
    2101 gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc taagttaagg 
    2161 caggggtata ggccagtgtt ctcttcccca ccctcttatt tccagcagac ccatatccaa 
    2221 caggacccag cactgccaac cagagaaggc aaagaaggag acggtggaga aagcggtggc 
    2281 aacagctcct ggccttggca gatagaatac attcatctcc tgatccgcca actgatacgc 
    2341 ctcttgactt ggctattcag caactgcaga accttgctat cgagagtata ccagatcctc 
    2401 caaccaatac tccagaggct ctctgcgacc ctacagagaa ttcgagaagt cctcaggact 
    2461 gaactgacct acctacaata tgggtggagc tatttccagg aggcggtcca agccggctgg 
    2521 agatctgcga cagagactct tgcgggcgcg tggggagact tatgggagac tcttaggaga 
    2581 ggtggaagat ggatcctcgc aattcctagg aggattagac aagggcttga gctcactctc 
    2641 ttgtga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health