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LOCUS KJ362096 1805 bp RNA linear VRL 12-MAY-2014
DEFINITION Simian immunodeficiency virus isolate BH66.Post.P1F2 from USA
envelope glycoprotein (env) gene, partial cds
ACCESSION KJ362096
VERSION KJ362096.1 GI:633019401
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1805)
Show all sequences for reference 1
AUTHORS Mandell,D.T., Kristoff,J., Gaufin,T., Gautam,R., Ma,D., Sandler,N.,
Haret-Richter,G., Xu,C., Aamer,H., Dufour,J., Trichel,A.,
Douek,D.C., Keele,B.F., Apetrei,C. and Pandrea,I.
TITLE Pathogenic Features Associated with Increased Virulence upon Simian
Immunodeficiency Virus Cross-Species Transmission from Natural
Hosts.
JOURNAL J. Virol.. 88(12); 6778-6792 (2014)
PUBMED 24696477
REFERENCE 2 (bases 1 to 1805)
Show all sequences for reference 2
AUTHORS Del Prete,G.Q., Mandell,D.T., Keele,B.F., Hatziioannou,T.,
Apetrei,C. and Pandrea,I.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2014) AIDS and Cancer Virus Program, Frederick
National Laboratory, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 5.0.1
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1805
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/strain="SIVagm"
/isolate="BH66.Post.P1F2"
/host="Macaca nemestrina (pigtail macaque)"
/db_xref="taxon:11723"
/country="USA"
gene <1..>1805
/gene="env"
CDS <1..>1805
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AHZ44602.1"
/db_xref="GI:633019402"
/translation="GYALLKCNDHDYRGHKNCQNVSVAACTGLMNTTISTGIGINGSR
AENRTEIWQEDGDSTDTVIIKLNKYYNLTIRCRRPGNKTVLPVTIMAGLVFHSQKYNT
RLKQAWCWFGGNWTQAWKEVRETIVKLPNTTYKGTRNISQIFLQRQWGDPESENFFFN
CQGEFFYCKMDWFLNYLNNQSVDPYHNPCGNKGDKKCWQRTYVPCHIRQVVNDWYTLA
EKTYAPPREGHLECTSTATALYVELNYNSNNRTNVTLSPQIRSIWSYELGDYKLVEIK
PIGFAPTEVRRYTGPERQKRVPFVLGFLGFLGAAGAAMGAAATALTVQSQQLLAGILQ
QQKNLLAAVEQQQQMLKLTIWGVKNLNARVTALEKYLEDQARLNIWGCAFRQICHTTV
PWKFNNTPNWNNMTWQEWERQIGDLEGNISRTLEEAHEQEQKNLDSYQKLVSWSDFWS
WFDLSRWFGWLKIGFLVIAGIIGLRIVFIVIGLLRKFKAGYAPLSSLPSYNQQIHIHL
DKEQPGREEEPDKGGPSSDSRSYTWQREFLNHLLSPLINLLRSLINWFLTTCRHLLSP
LRQCLETTRQGTRSTRAYLEYGWQEFKAAAAALALA"
BASE COUNT 577 a 370 c 436 g 422 t
ORIGIN
1 ggttatgccc ttttgaaatg taatgatcat gattatagag gccataagaa ctgtcaaaat
61 gtatcagtag cagcttgcac aggcttgatg aatactacta taagtacagg gatagggatt
121 aatggaagta gagcagaaaa taggacagaa atttggcaag aagatggtga tagcactgat
181 acagtgatta ttaagttaaa taagtactat aatttaacaa taagatgtag aagaccagga
241 aacaagacag tgttaccagt caccataatg gctggcctag tgtttcatag tcagaaatat
301 aatactaggt taaagcaggc ctggtgttgg ttcggaggaa actggacaca agcctggaaa
361 gaagttaggg agacaatagt aaagctgcca aacaccactt acaaaggaac caggaacata
421 agtcagatct tcctacaaag gcaatgggga gatccagaat ctgagaattt cttctttaat
481 tgccaaggag aattcttcta ttgtaaaatg gattggtttt taaattacct caataaccag
541 tcggtagacc cttaccacaa cccctgtggt aacaaagggg ataaaaagtg ttggcaaaga
601 acctatgtgc cctgccatat taggcaagtg gttaatgact ggtataccct ggccgaaaag
661 acttatgcgc ctcccagaga aggtcacttg gagtgtacct ctacggccac tgcactgtat
721 gtggagctaa attataacag taacaacaga acaaatgtga cattgagtcc tcaaataagg
781 tctatttggt cctatgaact aggggactac aaattggtgg aaataaaacc cattggcttt
841 gcaccaacag aagtaaggag atatacgggc ccagaaagac aaaaaagggt gcccttcgtg
901 ctagggttcc taggcttctt aggagctgct ggagctgcaa tgggtgcagc agctacggcg
961 ctgacggtcc agtctcagca attacttgct gggatattgc agcagcagaa gaatctgctt
1021 gcggcagtag agcagcagca acaaatgcta aagctcacca tttggggtgt caaaaacctc
1081 aatgcccgcg tcacagctct tgagaagtac ctagaggatc aggcacggtt aaatatttgg
1141 ggatgtgcct ttaggcaaat atgccacaca acagtgcctt ggaagtttaa taacactcca
1201 aattggaaca acatgacctg gcaagagtgg gagcggcaaa taggtgactt ggaagggaat
1261 atcagtagaa cactggaaga ggctcatgaa caagagcaga aaaatttgga ttcatatcaa
1321 aaactggtct cctggtcaga cttctggtcc tggtttgatc tctctcgctg gtttggctgg
1381 ctaaaaatag gtttcctggt catagcaggc attataggac taaggatagt gttcatagtt
1441 ataggattgc ttaggaaatt taaggcaggg tatgcacctc tctcctccct cccctcttat
1501 aatcaacaga tccatatcca cctggacaag gaacagccag gcagagaaga agagccagac
1561 aaaggtgggc caagcagcga cagcagatca tacacctggc agagagaatt cttgaaccac
1621 ctcctgagtc cattgatcaa cttgctcagg agcttgatca attggttctt gacaacttgc
1681 agacacctcc tcagtcccct ccgccagtgc ctggaaacca cccgacaggg aacaagatca
1741 acaagagctt accttgaata tgggtggcaa gaattcaaag cagcagcagc agcgctcgct
1801 ttggc
//
last modified: Tue May 31 10:56 2022