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LOCUS KJ362092 1497 bp RNA linear VRL 12-MAY-2014
DEFINITION Simian immunodeficiency virus isolate BH66.P3D6 from USA envelope
glycoprotein (env) gene, partial cds
ACCESSION KJ362092
VERSION KJ362092.1 GI:633019393
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Mandell,D.T., Kristoff,J., Gaufin,T., Gautam,R., Ma,D., Sandler,N.,
Haret-Richter,G., Xu,C., Aamer,H., Dufour,J., Trichel,A.,
Douek,D.C., Keele,B.F., Apetrei,C. and Pandrea,I.
TITLE Pathogenic Features Associated with Increased Virulence upon Simian
Immunodeficiency Virus Cross-Species Transmission from Natural
Hosts.
JOURNAL J. Virol.. 88(12); 6778-6792 (2014)
PUBMED 24696477
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Del Prete,G.Q., Mandell,D.T., Keele,B.F., Hatziioannou,T.,
Apetrei,C. and Pandrea,I.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2014) AIDS and Cancer Virus Program, Frederick
National Laboratory, 1050 Boyles Street, Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 5.0.1
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1497
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/strain="SIVagm"
/isolate="BH66.P3D6"
/host="Macaca nemestrina (pigtail macaque)"
/db_xref="taxon:11723"
/country="USA"
gene <1..>1497
/gene="env"
CDS <1..>1497
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AHZ44598.1"
/db_xref="GI:633019394"
/translation="GYALLKCNDHDYRGHKNCQNVSVAACTGLMNTTISTGIGINGSR
AENRTEIWQEDGDSNDTVIIKLNKYYNLTIRCRRPGNKTVLPVTIMAGLVFHSQKYNT
RLKQAWCWFGGNWTQAWKEVRETIVKLPNTTYKGTRNISQIFLQRQWGDPEAENFFFN
CQGEFFYCKMDWFLNYLNNQSVDPDHNPCKTKGDKKCWQRTYVPCHIRQVVNDWYTLA
KKTYAPPREGHLECTSTATALYVELNYNSNNRTNVTLSPQIRSIWSYELGDYKLVEIK
PIGFAPTEVRRYTGPERQKRVPFVLGFLGFLGAAGAAMGAAATALTVQSQQLLAGILQ
QQKNLLAAVEQQQQMLKLTIWGVKNLNARVTALEKYLEDQARLNIWGCAFRQICHTTV
LWKFNNTPDWNNMTWQEWERQIGDLEGNISRTLEEAHEQEQKNLDSYQKLVSWSDFWS
WFDLSRWFGWLKIGFLVIAGIIGLRIVFIVIGLLRKFKAGYAPLSSLPS"
BASE COUNT 478 a 286 c 369 g 364 t
ORIGIN
1 ggttatgccc ttttgaaatg taatgatcat gattatagag gccataagaa ctgtcaaaat
61 gtatcagtag cagcttgcac aggcttgatg aatactacta taagtacagg gatagggatt
121 aatggaagta gagcagaaaa taggacagaa atttggcaag aagatggtga tagcaatgat
181 acagtgatta ttaagttaaa taagtactat aatttaacaa taagatgtag aagaccagga
241 aacaagacag tgttaccagt caccataatg gctggcctag tgtttcatag tcagaaatat
301 aatactaggt tgaagcaggc ctggtgttgg tttggaggaa actggacaca agcctggaaa
361 gaagttaggg agacaatagt aaagctgcca aacaccactt acaaaggaac caggaacata
421 agtcagatct tcctacaaag gcaatgggga gatccagaag ctgagaattt cttctttaat
481 tgccaaggag aatttttcta ttgtaaaatg gattggtttt tgaattacct caacaaccag
541 tcggtagacc ctgaccacaa cccctgtaag accaaagggg ataaaaagtg ttggcagaga
601 acctatgtgc cctgccatat taggcaagtg gttaatgact ggtataccct ggccaaaaag
661 acttatgcgc ctcccagaga aggtcacttg gagtgtacct ctacggccac tgcactgtat
721 gtggagctca attataacag taacaacaga acaaatgtga cattgagtcc tcaaataagg
781 tctatttggt cctatgaact aggggactac aaattggtgg aaataaaacc cattggcttt
841 gcaccaacag aagtaaggag atatacgggc ccagaaagac aaaaaagggt gcccttcgtg
901 ctagggttcc taggcttctt aggagctgct ggagctgcaa tgggtgcagc agctacggcg
961 ctgacggtcc agtctcagca attacttgct gggatattgc agcagcagaa gaatctgctt
1021 gcggcagtag agcagcagca acaaatgcta aagctcacca tttggggtgt caaaaacctc
1081 aatgcccgcg tcacagctct tgagaagtac ctagaggatc aggcacggtt gaatatttgg
1141 ggatgcgcct ttaggcaaat atgccacaca acagtgcttt ggaagtttaa taacactcca
1201 gactggaaca acatgacctg gcaagagtgg gagcggcaaa taggtgactt ggaagggaat
1261 atcagtagaa cactggaaga ggctcatgaa caagagcaga aaaatttgga ttcatatcaa
1321 aaactggtct cctggtcaga cttctggtcc tggtttgatc tctctcgctg gtttggctgg
1381 ctaaaaatag gtttcctggt catagcaggc attataggac taaggatagt gttcatagtt
1441 ataggattgc ttaggaaatt taaggcaggg tatgcacctc tctcctccct cccctct
//
last modified: Tue May 31 10:56 2022