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LOCUS KJ152009 756 bp RNA linear VRL 02-FEB-2015
DEFINITION HIV-1 isolate PIC1869_PHM53 from USA pol protein (pol) gene,
partial cds
ACCESSION KJ152009
VERSION KJ152009.1 GI:586963077
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 756)
Show all sequences for reference 1
AUTHORS Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
Holte,S., Maenza,J., Stevens,C.E., Buskin,S.E., Mullins,J.I.,
Frenkel,L.M. and Collier,A.C.
TITLE Lack of resistance to integrase inhibitors among
antiretroviral-naive subjects with primary HIV-1 infection,
2007-2013.
JOURNAL Antivir Ther. 2015;20(1):77-80. doi: 10.3851/IMP2780. Epub 2014 May
15.
PUBMED 24831260
REFERENCE 2 (bases 1 to 756)
Show all sequences for reference 2
AUTHORS Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
Holte,S., Maenza,J., Stevens,C.E., Buskin,S., Mullins,J.I.,
Frenkel,L.M. and Collier,A.C.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2014) Infections and Prematurity, Seattle
Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
98101-1304, USA
FEATURES Location/Qualifiers
source 1..756
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="PIC1869_PHM53"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2010"
/group="B"
gene <1..>756
/gene="pol"
CDS <1..>756
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AHK05846.1"
/db_xref="GI:586963078"
/translation="VASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVA
SGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQE
FGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAVFIHNFKRKGGIGGYSA
GERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDN
SDIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED"
mat_peptide <1..753
/gene="pol"
/product="integrase"
/peptide="VASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYI
EAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIP
YNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAVFIHNFKRKGGIGGYSAGERI
VDIIATDLQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIK
VVPRRKAKIIRDYGKQMAGDDCVAGRQDE"
BASE COUNT 294 a 119 c 189 g 154 t
ORIGIN
1 gtagccagct gtgataaatg ccagttaaaa ggagaagcca tgcatgggca agtagactgc
61 agtccaggaa tatggcaact agattgtaca catttagaag gaaaaattat cctagtagca
121 gttcatgtag ccagtggcta tatagaagca gaagttattc cagcagaaac aggacaggaa
181 acagcatact tcatcttaaa attagcagga agatggccag tgaaaacaat acatacagac
241 aatggcagca acttcaccag tactacggtt aaggccgcct gttggtgggc agggatcaag
301 caggaatttg gcattcccta caatccccaa agtcagggag tagtagaatc tatgaataat
361 gaattaaaga aaattatagg acaggtaaga gatcaggctg aacatcttag gacagcagta
421 caaatggcag tattcatcca caattttaaa agaaaagggg ggattggggg gtacagtgca
481 ggggaaagaa tagtagacat aatagcaaca gacttacaaa ctaaagaact acaaaaacaa
541 attacaaaaa tacaaaattt tcgggtttat tacagggaca gcagagatcc aatttggaaa
601 ggaccagcaa aactcctttg gaaaggtgaa ggggcagtag taatacaaga taatagtgac
661 ataaaagtag tgccaagaag aaaagcaaag atcatcaggg attatggaaa acagatggca
721 ggcgatgatt gtgtggcagg tagacaggat gaggat
//
last modified: Tue May 31 10:56 2022