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LOCUS	    KJ152009		     756 bp    RNA     linear	VRL 02-FEB-2015
DEFINITION  HIV-1 isolate PIC1869_PHM53 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   KJ152009
VERSION     KJ152009.1 GI:586963077
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 756)
            Show all sequences for reference 1
  AUTHORS   Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
	    Holte,S., Maenza,J., Stevens,C.E., Buskin,S.E., Mullins,J.I.,
	    Frenkel,L.M. and Collier,A.C.
  TITLE     Lack of resistance to integrase inhibitors among
	    antiretroviral-naive subjects with primary HIV-1 infection,
	    2007-2013.
  JOURNAL   Antivir Ther. 2015;20(1):77-80. doi: 10.3851/IMP2780. Epub 2014 May
	    15.
  PUBMED    24831260
REFERENCE   2 (bases 1 to 756)
            Show all sequences for reference 2
  AUTHORS   Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
	    Holte,S., Maenza,J., Stevens,C.E., Buskin,S., Mullins,J.I.,
	    Frenkel,L.M. and Collier,A.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2014) Infections and Prematurity, Seattle
	    Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
	    98101-1304, USA
FEATURES             Location/Qualifiers
     source	     1..756
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PIC1869_PHM53"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2010"
		     /group="B"
     gene	     <1..>756
		     /gene="pol"
     CDS	     <1..>756
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AHK05846.1"
		     /db_xref="GI:586963078"
		     /translation="VASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVA
		     SGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQE
		     FGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAVFIHNFKRKGGIGGYSA
		     GERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDN
		     SDIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED"
     mat_peptide     <1..753
		     /gene="pol"
		     /product="integrase"
		     /peptide="VASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYI
		     EAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIP
		     YNPQSQGVVESMNNELKKIIGQVRDQAEHLRTAVQMAVFIHNFKRKGGIGGYSAGERI
		     VDIIATDLQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIK
		     VVPRRKAKIIRDYGKQMAGDDCVAGRQDE"
BASE COUNT	294 a	 119 c	  189 g    154 t
ORIGIN
       1 gtagccagct gtgataaatg ccagttaaaa ggagaagcca tgcatgggca agtagactgc 
      61 agtccaggaa tatggcaact agattgtaca catttagaag gaaaaattat cctagtagca 
     121 gttcatgtag ccagtggcta tatagaagca gaagttattc cagcagaaac aggacaggaa 
     181 acagcatact tcatcttaaa attagcagga agatggccag tgaaaacaat acatacagac 
     241 aatggcagca acttcaccag tactacggtt aaggccgcct gttggtgggc agggatcaag 
     301 caggaatttg gcattcccta caatccccaa agtcagggag tagtagaatc tatgaataat 
     361 gaattaaaga aaattatagg acaggtaaga gatcaggctg aacatcttag gacagcagta 
     421 caaatggcag tattcatcca caattttaaa agaaaagggg ggattggggg gtacagtgca 
     481 ggggaaagaa tagtagacat aatagcaaca gacttacaaa ctaaagaact acaaaaacaa 
     541 attacaaaaa tacaaaattt tcgggtttat tacagggaca gcagagatcc aatttggaaa 
     601 ggaccagcaa aactcctttg gaaaggtgaa ggggcagtag taatacaaga taatagtgac 
     661 ataaaagtag tgccaagaag aaaagcaaag atcatcaggg attatggaaa acagatggca 
     721 ggcgatgatt gtgtggcagg tagacaggat gaggat
//
last modified: Tue May 31 10:56 2022


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