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LOCUS	    KJ151983		     898 bp    RNA     linear	VRL 02-FEB-2015
DEFINITION  HIV-1 isolate PIC1910_PGX57 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   KJ151983
VERSION     KJ151983.1 GI:586963025
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 898)
            Show all sequences for reference 1
  AUTHORS   Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
	    Holte,S., Maenza,J., Stevens,C.E., Buskin,S.E., Mullins,J.I.,
	    Frenkel,L.M. and Collier,A.C.
  TITLE     Lack of resistance to integrase inhibitors among
	    antiretroviral-naive subjects with primary HIV-1 infection,
	    2007-2013.
  JOURNAL   Antivir Ther. 2015;20(1):77-80. doi: 10.3851/IMP2780. Epub 2014 May
	    15.
  PUBMED    24831260
REFERENCE   2 (bases 1 to 898)
            Show all sequences for reference 2
  AUTHORS   Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
	    Holte,S., Maenza,J., Stevens,C.E., Buskin,S., Mullins,J.I.,
	    Frenkel,L.M. and Collier,A.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2014) Infections and Prematurity, Seattle
	    Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
	    98101-1304, USA
FEATURES             Location/Qualifiers
     source	     1..898
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PIC1910_PGX57"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2012"
		     /group="B"
     gene	     <1..>898
		     /gene="pol"
     CDS	     <1..>898
		     /gene="pol"
		     /codon_start="2"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AHK05820.1"
		     /db_xref="GI:586963026"
		     /translation="KLVSTGIRRVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVA
		     KEIVNCCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPA
		     ETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQG
		     VVESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATN
		     IQTTELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKA
		     KIIRDYGKQMAGDDCVASRQDED"
     mat_peptide     <1..754
		     /gene="pol"
		     /product="integrase"
		     /peptide="KLVSTGIRRVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIV
		     NCCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQ
		     ETAYFLLKLAGRWPVKTIHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVVES
		     MNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATNIQTT
		     ELQKQITKIQNFRVYYRDSRDPLWKGPAK"
BASE COUNT	351 a	 131 c	  218 g    196 t      2 other
ORIGIN
       1 taaattagtc agtactggaa tcaggagagt actatttcta gatggaatag ataaagccca 
      61 agaagaacat gagaaatatc atagtaattg gagagcaatg gctagtgatt ttaacctrcc 
     121 acctgtagta gcaaaagaga tagtaaactg ttgtgataaa tgtcagcaaa aaggagaagc 
     181 tatgcatgga caagtagact gtagtccagg aatatggcaa ctagattgta cacatttaga 
     241 aggaaaagtt atcctggtag cagttcatgt agccagtgga tatatagaag cagaagttat 
     301 tccagcagag acagggcagg aaacagccta ctttctctta aagctagcag gaagatggcc 
     361 agtgaaaaca atacatacag acaatggcag caatttcacc agtgctgcgg ttaaggctgc 
     421 ctgttggtgg gcaggaatca agcaagaatt tggcattccc tacaatcccc aaagtcaagg 
     481 agtagtagaa tctatgaata aagaattaaa gaaaattata ggacaagtaa gagatcaggc 
     541 tgaacatctt aagacagcag tacaaatggc agtatttgtc cacaatttta aaagaaaagg 
     601 ggggattggg ggatacagtg caggggaaag aataatagac ataatagcaa caaacataca 
     661 aactacagaa ttacaaaaac aaattacaaa aattcaaaat tttcgggttt attacaggga 
     721 cagcagagat ccactttgga aaggaccagc aaagctyctc tggaaaggtg aaggggcagt 
     781 agtaatacaa gataatagtg acataaaagt agtgccaaga agaaaagcaa agatcattag 
     841 ggattatgga aaacagatgg caggtgatga ttgtgtggca agtagacagg atgaggat
//
last modified: Tue May 31 10:56 2022


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