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LOCUS KJ151983 898 bp RNA linear VRL 02-FEB-2015
DEFINITION HIV-1 isolate PIC1910_PGX57 from USA pol protein (pol) gene,
partial cds
ACCESSION KJ151983
VERSION KJ151983.1 GI:586963025
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 898)
Show all sequences for reference 1
AUTHORS Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
Holte,S., Maenza,J., Stevens,C.E., Buskin,S.E., Mullins,J.I.,
Frenkel,L.M. and Collier,A.C.
TITLE Lack of resistance to integrase inhibitors among
antiretroviral-naive subjects with primary HIV-1 infection,
2007-2013.
JOURNAL Antivir Ther. 2015;20(1):77-80. doi: 10.3851/IMP2780. Epub 2014 May
15.
PUBMED 24831260
REFERENCE 2 (bases 1 to 898)
Show all sequences for reference 2
AUTHORS Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
Holte,S., Maenza,J., Stevens,C.E., Buskin,S., Mullins,J.I.,
Frenkel,L.M. and Collier,A.C.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2014) Infections and Prematurity, Seattle
Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
98101-1304, USA
FEATURES Location/Qualifiers
source 1..898
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="PIC1910_PGX57"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2012"
/group="B"
gene <1..>898
/gene="pol"
CDS <1..>898
/gene="pol"
/codon_start="2"
/transl_table="1"
/product="pol protein"
/protein_id="AHK05820.1"
/db_xref="GI:586963026"
/translation="KLVSTGIRRVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVA
KEIVNCCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPA
ETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQG
VVESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATN
IQTTELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKA
KIIRDYGKQMAGDDCVASRQDED"
mat_peptide <1..754
/gene="pol"
/product="integrase"
/peptide="KLVSTGIRRVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIV
NCCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQ
ETAYFLLKLAGRWPVKTIHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVVES
MNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATNIQTT
ELQKQITKIQNFRVYYRDSRDPLWKGPAK"
BASE COUNT 351 a 131 c 218 g 196 t 2 other
ORIGIN
1 taaattagtc agtactggaa tcaggagagt actatttcta gatggaatag ataaagccca
61 agaagaacat gagaaatatc atagtaattg gagagcaatg gctagtgatt ttaacctrcc
121 acctgtagta gcaaaagaga tagtaaactg ttgtgataaa tgtcagcaaa aaggagaagc
181 tatgcatgga caagtagact gtagtccagg aatatggcaa ctagattgta cacatttaga
241 aggaaaagtt atcctggtag cagttcatgt agccagtgga tatatagaag cagaagttat
301 tccagcagag acagggcagg aaacagccta ctttctctta aagctagcag gaagatggcc
361 agtgaaaaca atacatacag acaatggcag caatttcacc agtgctgcgg ttaaggctgc
421 ctgttggtgg gcaggaatca agcaagaatt tggcattccc tacaatcccc aaagtcaagg
481 agtagtagaa tctatgaata aagaattaaa gaaaattata ggacaagtaa gagatcaggc
541 tgaacatctt aagacagcag tacaaatggc agtatttgtc cacaatttta aaagaaaagg
601 ggggattggg ggatacagtg caggggaaag aataatagac ataatagcaa caaacataca
661 aactacagaa ttacaaaaac aaattacaaa aattcaaaat tttcgggttt attacaggga
721 cagcagagat ccactttgga aaggaccagc aaagctyctc tggaaaggtg aaggggcagt
781 agtaatacaa gataatagtg acataaaagt agtgccaaga agaaaagcaa agatcattag
841 ggattatgga aaacagatgg caggtgatga ttgtgtggca agtagacagg atgaggat
//
last modified: Tue May 31 10:56 2022