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LOCUS	    KJ151976		     898 bp    RNA     linear	VRL 02-FEB-2015
DEFINITION  HIV-1 isolate PIC1878_PGK58 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   KJ151976
VERSION     KJ151976.1 GI:586963011
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 898)
            Show all sequences for reference 1
  AUTHORS   Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
	    Holte,S., Maenza,J., Stevens,C.E., Buskin,S.E., Mullins,J.I.,
	    Frenkel,L.M. and Collier,A.C.
  TITLE     Lack of resistance to integrase inhibitors among
	    antiretroviral-naive subjects with primary HIV-1 infection,
	    2007-2013.
  JOURNAL   Antivir Ther. 2015;20(1):77-80. doi: 10.3851/IMP2780. Epub 2014 May
	    15.
  PUBMED    24831260
REFERENCE   2 (bases 1 to 898)
            Show all sequences for reference 2
  AUTHORS   Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
	    Holte,S., Maenza,J., Stevens,C.E., Buskin,S., Mullins,J.I.,
	    Frenkel,L.M. and Collier,A.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2014) Infections and Prematurity, Seattle
	    Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
	    98101-1304, USA
FEATURES             Location/Qualifiers
     source	     1..898
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PIC1878_PGK58"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2011"
		     /group="B"
     gene	     <1..>898
		     /gene="pol"
     CDS	     <1..>898
		     /gene="pol"
		     /codon_start="2"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AHK05813.1"
		     /db_xref="GI:586963012"
		     /translation="KLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVA
		     KEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAIHVASGYMEAEVIPA
		     ETGQETAYFLLKLAGRWPVQAIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQG
		     VVESMNKELKKIIQQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATD
		     IQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQENSDIKVVPRRKA
		     KIIRDYGKQMAGNDCVASRQDED"
     mat_peptide     <1..754
		     /gene="pol"
		     /product="integrase"
		     /peptide="KLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIV
		     ASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAIHVASGYMEAEVIPAETGQ
		     ETAYFLLKLAGRWPVQAIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVES
		     MNKELKKIIQQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTK
		     ELQKQITKIQNFRVYYRDSRDPIWKGPAK"
BASE COUNT	347 a	 139 c	  222 g    190 t
ORIGIN
       1 taaattagtc agtgctggaa tcaggaaagt actattttta gatggaatag acaaggctca 
      61 agaagaccat gaaaaatatc acagtaattg gagagcaatg gctaatgagt ttaacctgcc 
     121 acctatagta gcaaaagaaa tagtggccag ctgtgataaa tgccagctaa aaggagaagc 
     181 catacatgga caggtagact gtagtccagg aatatggcaa ctagattgta cacatttaga 
     241 aggaaaaatt attctggtag caattcatgt agccagtgga tatatggaag cagaagttat 
     301 tccagcagag acagggcagg aaacagcata cttcctctta aagttagcag gaaggtggcc 
     361 agtacaagca atacataccg acaatggcag caatttcacc agtactgcag tcaaggccgc 
     421 ctgttggtgg gcggggatca agcaagaatt tggcattccc tacaatcccc aaagtcaagg 
     481 agtagtggaa tctatgaata aagaattaaa gaaaattata caacaggtaa gagatcaggc 
     541 tgaacatctt aagacagcag tacaaatggc agtgttcatc cacaatttta aaagaaaagg 
     601 ggggattggg gggtacagtg caggggaaag aatagtagac ataatagcaa cagacataca 
     661 aactaaagaa ttacaaaaac agattacaaa aattcaaaat tttcgggttt attacaggga 
     721 cagcagagat cccatttgga aaggaccagc aaagcttctc tggaaaggtg aaggggcagt 
     781 agtaatacaa gaaaatagtg acataaaagt agtgccaaga agaaaagcaa agatcattag 
     841 ggattatgga aaacagatgg caggtaatga ttgtgtggca agtagacagg atgaggat
//
last modified: Tue May 31 10:56 2022


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