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LOCUS KJ151976 898 bp RNA linear VRL 02-FEB-2015
DEFINITION HIV-1 isolate PIC1878_PGK58 from USA pol protein (pol) gene,
partial cds
ACCESSION KJ151976
VERSION KJ151976.1 GI:586963011
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 898)
Show all sequences for reference 1
AUTHORS Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
Holte,S., Maenza,J., Stevens,C.E., Buskin,S.E., Mullins,J.I.,
Frenkel,L.M. and Collier,A.C.
TITLE Lack of resistance to integrase inhibitors among
antiretroviral-naive subjects with primary HIV-1 infection,
2007-2013.
JOURNAL Antivir Ther. 2015;20(1):77-80. doi: 10.3851/IMP2780. Epub 2014 May
15.
PUBMED 24831260
REFERENCE 2 (bases 1 to 898)
Show all sequences for reference 2
AUTHORS Stekler,J.D., McKernan,J., Milne,R., Tapia,K.A., Mykhalchenko,K.,
Holte,S., Maenza,J., Stevens,C.E., Buskin,S., Mullins,J.I.,
Frenkel,L.M. and Collier,A.C.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2014) Infections and Prematurity, Seattle
Childrens Research Institute, 1900 Ninth Avenue, Seattle, WA
98101-1304, USA
FEATURES Location/Qualifiers
source 1..898
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="PIC1878_PGK58"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2011"
/group="B"
gene <1..>898
/gene="pol"
CDS <1..>898
/gene="pol"
/codon_start="2"
/transl_table="1"
/product="pol protein"
/protein_id="AHK05813.1"
/db_xref="GI:586963012"
/translation="KLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVA
KEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAIHVASGYMEAEVIPA
ETGQETAYFLLKLAGRWPVQAIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQG
VVESMNKELKKIIQQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATD
IQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQENSDIKVVPRRKA
KIIRDYGKQMAGNDCVASRQDED"
mat_peptide <1..754
/gene="pol"
/product="integrase"
/peptide="KLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMANEFNLPPIVAKEIV
ASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAIHVASGYMEAEVIPAETGQ
ETAYFLLKLAGRWPVQAIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVES
MNKELKKIIQQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTK
ELQKQITKIQNFRVYYRDSRDPIWKGPAK"
BASE COUNT 347 a 139 c 222 g 190 t
ORIGIN
1 taaattagtc agtgctggaa tcaggaaagt actattttta gatggaatag acaaggctca
61 agaagaccat gaaaaatatc acagtaattg gagagcaatg gctaatgagt ttaacctgcc
121 acctatagta gcaaaagaaa tagtggccag ctgtgataaa tgccagctaa aaggagaagc
181 catacatgga caggtagact gtagtccagg aatatggcaa ctagattgta cacatttaga
241 aggaaaaatt attctggtag caattcatgt agccagtgga tatatggaag cagaagttat
301 tccagcagag acagggcagg aaacagcata cttcctctta aagttagcag gaaggtggcc
361 agtacaagca atacataccg acaatggcag caatttcacc agtactgcag tcaaggccgc
421 ctgttggtgg gcggggatca agcaagaatt tggcattccc tacaatcccc aaagtcaagg
481 agtagtggaa tctatgaata aagaattaaa gaaaattata caacaggtaa gagatcaggc
541 tgaacatctt aagacagcag tacaaatggc agtgttcatc cacaatttta aaagaaaagg
601 ggggattggg gggtacagtg caggggaaag aatagtagac ataatagcaa cagacataca
661 aactaaagaa ttacaaaaac agattacaaa aattcaaaat tttcgggttt attacaggga
721 cagcagagat cccatttgga aaggaccagc aaagcttctc tggaaaggtg aaggggcagt
781 agtaatacaa gaaaatagtg acataaaagt agtgccaaga agaaaagcaa agatcattag
841 ggattatgga aaacagatgg caggtaatga ttgtgtggca agtagacagg atgaggat
//
last modified: Tue May 31 10:56 2022