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LOCUS	    KF996665		    2556 bp    RNA     linear	VRL 23-FEB-2014
DEFINITION  HIV-1 isolate CAP256.12mo.3 from South Africa envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   KF996665
VERSION     KF996665.1 GI:585635655
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2556)
            Show all sequences for reference 1
  AUTHORS   Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
	    DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
	    Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
	    Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
	    McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
	    Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
	    Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
	    Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
	    Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
	    Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
	    Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
	    Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
	    Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
	    Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
	    Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
	    Young,A.
  TITLE     Developmental pathway for potent V1V2-directed HIV-neutralizing
	    antibodies.
  JOURNAL   Nature.. 509(7498); 55-62 (2014)
  PUBMED    24590074
REFERENCE   2 (bases 1 to 2556)
            Show all sequences for reference 2
  AUTHORS   Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
	    for Communicable Diseases, 1 Modderfontein Road, Sandringham,
	    Johannesburg, Gauteng 2131, South Africa
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2556
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP256.12mo.3"
		     /isolation_source="48 weeks post-infection plasma sample"
		     /host="Homo sapiens; female"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="28-Jun-2006"
		     /note="subtype: C"
     gene	     1..2556
		     /gene="env"
     CDS	     1..2556
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AHJ58980.1"
		     /db_xref="GI:585635656"
		     /translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
		     KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQELVLENVTENFNMWKNDMVDQMHE
		     DIISLWDQSLKPCVKLTPLCVTLNCSDAKGNENVTYNGTREEIKNCSFNATTEVRDKI
		     RKEYALFYRLDIVPLSGEGNNNSEYRLINCNTSVITQACPKVTFDPIPIHYCAPAGYA
		     ILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTDNVK
		     TIIVHLNESVEINCIRPNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISEIKWEKT
		     LQRVSEKLREHFNKTIIFNQSSGGDLEITTHSFNCGGEFFYCNTSDLFFNKTFNETYR
		     TGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNITGLLLTRDGGGNN
		     STEETFRPGGGDMRNNWRSELYKYKVVEIKPLGIAPTEAKRRVVEREKRAVGMGAVIF
		     GFLGAAGSTMGAASMALTVQAKQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQA
		     RVLAIERYLKDQQLLGLWGCSGKLICTTAVPWNSSWSNKSQADIWDNMTWMQWDREIS
		     NYTGIIYSLLEESQNQQEKNEKDLLALDSWNSLWSWFSISTWLWYIRIFVMIVGGLIG
		     LRIIFAVLSLVNRVRQGYSPLSFQTLTPNPRELDRLGGIEEEGGEQDRDRSIRLVSGF
		     FSLAWDDLRSLCLFSYHHLRDFTLIAARAVELLGRSILKGLQRGWEILKYLGSLVQYW
		     GLELKKSAINLFDTIAIAVAEGTDRIIEFLQRIVRAILHIPRRIRQGFEAALQ"
BASE COUNT	903 a	 432 c	  597 g    624 t
ORIGIN
       1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgt taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg 
     121 tggagagaag caaaaactac tctattttgt gcctcagatg ctaaatcata tgagaaagag 
     181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaaccc acaagaattg 
     241 gttttggaaa atgtaacaga aaattttaac atgtggaaaa atgacatggt agatcagatg 
     301 catgaagata taatcagttt atgggatcaa agcctcaagc catgtgtaaa gttgaccccg 
     361 ctctgtgtca ctctaaactg tagcgatgca aagggaaatg aaaatgttac ttataatgga 
     421 acaagggaag aaataaaaaa ttgctctttc aatgcgacca cagaggtaag agataagata 
     481 aggaaagaat atgcactctt ttatagactt gatatagtac cacttagtgg ggagggtaat 
     541 aacaacagtg aatatagatt aataaactgt aatacctcag tcataacaca agcctgtcca 
     601 aaggtcactt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta 
     661 aagtgtaata ataagacatt caatggcaca ggaccatgca ataatgtcag cacagtacaa 
     721 tgtacacatg gaattaagcc agtagtttca actcaactat tgttaaatgg tagcctagca 
     781 gaagaagaga taataattag atctgaaaac ctgacagaca atgtcaaaac aataatagta 
     841 catctcaatg aatctgtaga gattaattgt ataagaccca acaataatac aagaaaaagt 
     901 ataagaatag gaccaggaca aacattctat gcaacaggag acataatagg agatataaga 
     961 caagcacatt gtaacattag tgaaattaaa tgggagaaaa ctttacaaag agtaagtgaa 
    1021 aaattgagag aacacttcaa taagacaata atatttaatc aatcctcagg aggggaccta 
    1081 gaaattacaa cacatagctt taattgtgga ggagaatttt tctattgcaa tacgtcagat 
    1141 ctgtttttta ataagacatt taatgagaca tatcgtacag gaagtaattc aacaaattca 
    1201 accatcacac tcccatgcag aataaagcaa attataaaca tgtggcagga ggtgggtcga 
    1261 gcaatgtatg cctctcctat tgcaggagaa ataacatgta aatcaaatat cacaggacta 
    1321 ctattgacac gtgatggagg aggaaacaac agtacagaag aaacattcag acctggagga 
    1381 ggagatatga ggaacaattg gagaagtgaa ttatataaat ataaagtagt agaaattaaa 
    1441 ccattaggaa tagcacccac tgaagcaaaa aggagagtgg tggagagaga gaaacgagca 
    1501 gtaggaatgg gagctgtgat ctttgggttc ttgggagcag caggaagcac tatgggcgcg 
    1561 gcgtcaatgg cgctgacggt acaggccaaa caactgctgt ctggtatagt gcaacagcaa 
    1621 agcaatttgc tgagagctat agaggcgcaa cagcatatgt tgcaactcac agtctggggc 
    1681 atcaagcagc tccaggcaag agtcctggct atagaaagat acctaaaaga tcaacagctc 
    1741 ctagggcttt ggggctgctc tggaaaactc atctgcacca ctgctgtacc ttggaattcc 
    1801 agttggagta ataaatctca agcagatatt tgggataaca tgacctggat gcagtgggat 
    1861 agagaaatta gtaattacac aggcataata tacagtttgc ttgaagaatc gcagaaccag 
    1921 caggaaaaaa atgaaaaaga tttactagca ttggatagtt ggaacagtct gtggagttgg 
    1981 tttagcatat caacatggct gtggtatata agaatattcg taatgatagt aggaggcttg 
    2041 ataggcttaa gaataatttt tgctgtgctc tcgctagtga atagagttag gcagggatac 
    2101 tcacctttgt catttcagac ccttacccca aacccgaggg aactcgacag gctcggagga 
    2161 atcgaagaag aaggtggaga gcaagacaga gacagatcca tcagattagt gagcggattc 
    2221 ttctcacttg cctgggacga cctgcggagc ctgtgcctct tcagctacca ccacttgaga 
    2281 gacttcacat tgattgcagc gagagcagtg gaacttctgg gacgcagcat tctcaaggga 
    2341 ctacagaggg ggtgggaaat ccttaagtac ctgggaagtc ttgtgcagta ttggggtcta 
    2401 gagctaaaaa agagtgctat taatctgttt gataccatag caatagcagt agctgaagga 
    2461 acagatagga ttatagaatt cttacaaaga attgttagag ctatcctcca catacctaga 
    2521 agaataagac agggctttga agcagctttg caataa
//
last modified: Tue May 31 10:56 2022


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