View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KF996659 2556 bp RNA linear VRL 23-FEB-2014
DEFINITION HIV-1 isolate CAP256.12mo.15 from South Africa envelope
glycoprotein (env) gene, complete cds
ACCESSION KF996659
VERSION KF996659.1 GI:585635643
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2556)
Show all sequences for reference 1
AUTHORS Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
Young,A.
TITLE Developmental pathway for potent V1V2-directed HIV-neutralizing
antibodies.
JOURNAL Nature.. 509(7498); 55-62 (2014)
PUBMED 24590074
REFERENCE 2 (bases 1 to 2556)
Show all sequences for reference 2
AUTHORS Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
for Communicable Diseases, 1 Modderfontein Road, Sandringham,
Johannesburg, Gauteng 2131, South Africa
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2556
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP256.12mo.15"
/isolation_source="48 weeks post-infection plasma sample"
/host="Homo sapiens; female"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="28-Jun-2006"
/note="subtype: C"
gene 1..2556
/gene="env"
CDS 1..2556
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AHJ58974.1"
/db_xref="GI:585635644"
/translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQELVLENVTENFNMWKNDMVDQMHE
DIISLWDQSLKPCVKLTPLCVTLNCSDAKVNISATYNGTREEIKNCSFNATTELRDKI
KKEYALFYRLDIVPLSGEGNNNSEYRLINCNTSVITQACPKVTFDPIPIHYCAPAGYA
ILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTDNVK
TIIVHLNESIEINCTRPNNNTRKSIRIGPGQTFYATGDIIGDIRQAHCNISKIKWEKT
LQRVSKKLREHFNKTIIFNQSSGGDLEITTHSFNCGGEFFYCNTSDLFFNKTFNETYS
TGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNITGLLLTRDGGGNN
STEETFRPGGGDMRNNWRSELYKYKVVEIKPLGIAPTEAKRRVVEREKRAVGMGAVIF
GFLGAAGSTMGAASMALTVQAKQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQA
RVLAIERYLKDQQLLGLWGCSGKLICTTAVPWNSSWSNKSQADIWDNMTWMQWDREIS
NYTGIIYSLLEESQNQQEKNEKDLLALDSWNSLWNWFSISTWLWYIRIFVMIVGGLIG
LRIIFAVLSLVNRVRQGYSPLSFQTLTPNPRELDRLGGIEEEGGEQDRDRSIRLVSGF
FSLAWDDLRSLCLFSYHHLRDFTLIAARAVELLGRSILKGLQRGWEILKYLGSLVQYW
GLELKKSAINLFDTLAIVVAEGTDRIIEFLQRIVRAILHIPRRIRQGFEAALQ"
BASE COUNT 911 a 431 c 586 g 628 t
ORIGIN
1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc
61 ttttggatgt taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg
121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagag
181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaaccc acaagaattg
241 gttttggaaa atgtaacaga aaattttaac atgtggaaaa atgatatggt agatcagatg
301 catgaagata taatcagttt atgggatcaa agcctcaagc catgtgtaaa gttgaccccg
361 ctctgtgtca ctctaaactg tagcgatgca aaggtaaata taagtgctac ctataatgga
421 acaagggaag aaataaaaaa ttgctctttc aatgcgacca cagaattaag agataagata
481 aagaaagaat atgcactctt ttatagactt gatatagtac cacttagtgg ggagggtaat
541 aataacagtg aatatagatt aataaactgt aatacctcag tcataacaca agcctgtcca
601 aaggtcactt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta
661 aagtgtaata ataagacatt caatggcaca ggaccatgca ataatgtcag cacagtacaa
721 tgtacacatg gaattaagcc agtagtttca actcaactat tgttaaatgg tagcctagca
781 gaagaagaga taataattag atcagaaaac ctgacagaca atgtcaaaac aataatagta
841 catctcaatg aatctataga gattaattgt acaagaccca acaataatac aagaaaaagt
901 ataagaatag gaccaggaca aacattctat gcaacaggag acataatagg agatataaga
961 caagcacatt gtaacattag taaaattaaa tgggagaaaa ctttacaaag agtaagtaaa
1021 aaattgagag aacacttcaa taagacaata atatttaatc aatcctcagg aggggaccta
1081 gaaattacaa cacatagctt taattgtgga ggagaatttt tctattgcaa tacatcagat
1141 ctgtttttta ataagacatt taatgagaca tatagtacag gaagtaattc aacaaattca
1201 accatcacac tcccatgcag aataaagcaa attataaaca tgtggcagga ggtgggtcga
1261 gcaatgtatg cctctcctat tgcaggagaa ataacatgta aatcaaatat cacaggacta
1321 ctattgacac gtgatggagg aggaaacaac agtacagaag aaacattcag acctggagga
1381 ggagatatga ggaacaattg gagaagtgaa ttatataaat ataaagtagt agaaattaaa
1441 ccattaggaa tagcacccac tgaagcaaaa aggagagtgg tggagagaga gaaacgagca
1501 gtaggaatgg gagctgtgat ctttgggttc ttgggagcag caggaagcac tatgggcgcg
1561 gcgtcaatgg cgctgacggt acaggccaaa caactgctgt ctggtatagt gcaacagcaa
1621 agcaatttgc tgagagctat agaggcgcaa cagcatatgt tgcaactcac agtctggggc
1681 atcaagcagc tccaggcaag agtcctggct atagaaagat acctaaaaga tcaacagctc
1741 ctagggcttt ggggctgctc tggaaaactc atctgcacca ctgctgtacc ttggaattcc
1801 agttggagta ataaatctca agcagatatt tgggataaca tgacctggat gcagtgggat
1861 agagaaatta gtaattacac aggcataata tacagtttgc ttgaagaatc gcagaaccag
1921 caggaaaaaa atgaaaaaga tttactagca ttggatagtt ggaacagtct gtggaattgg
1981 tttagcatat caacatggct gtggtatata agaatattcg taatgatagt aggaggcttg
2041 ataggcttaa gaataatttt tgctgtgctc tcgctagtga atagagttag gcagggatac
2101 tcacctttgt catttcagac ccttacccca aacccgaggg aactcgacag gctcggagga
2161 atcgaagaag aaggtggaga gcaagacaga gacagatcca tcagattagt gagcggattc
2221 ttctcacttg cctgggacga cctgcggagc ctgtgcctct tcagctacca ccacttgaga
2281 gacttcacat tgattgcagc gagagcagtg gaacttctgg gacgcagcat tctcaaggga
2341 ctacaaaggg gttgggaaat ccttaagtat ctgggaagtc ttgtgcagta ttggggtcta
2401 gagctaaaaa agagtgctat taatctgttt gataccttag caatagtagt agctgaagga
2461 acagatagga ttatagaatt cttacaaaga attgttagag ctatcctcca catacctaga
2521 agaataagac agggctttga agcagctttg caataa
//
last modified: Tue May 31 10:56 2022