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LOCUS KF996633 2574 bp RNA linear VRL 23-FEB-2014
DEFINITION HIV-1 isolate CAP256.8mo.23 from South Africa envelope glycoprotein
(env) gene, complete cds
ACCESSION KF996633
VERSION KF996633.1 GI:585635591
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2574)
Show all sequences for reference 1
AUTHORS Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
Young,A.
TITLE Developmental pathway for potent V1V2-directed HIV-neutralizing
antibodies.
JOURNAL Nature.. 509(7498); 55-62 (2014)
PUBMED 24590074
REFERENCE 2 (bases 1 to 2574)
Show all sequences for reference 2
AUTHORS Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
for Communicable Diseases, 1 Modderfontein Road, Sandringham,
Johannesburg, Gauteng 2131, South Africa
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2574
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP256.8mo.23"
/isolation_source="34 weeks post-infection plasma sample"
/host="Homo sapiens; female"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="22-Mar-2006"
/note="subtype: C"
gene 1..2574
/gene="env"
CDS 1..2574
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AHJ58948.1"
/db_xref="GI:585635592"
/translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQMHE
DIISLWDQSLKPCVKLTPLCVTLNCTTAKGINSNDNANATKKPNEEIKNCSFNTITEV
RDKQKKEYALFYRLDIVPLSGEGNNNSKYRLINCNTSVITQACPKVTFDPIPIHYCAP
AGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLT
DNVKTIIVHLNESVEISCTRPNNNTRKSVRIGPGQTFYATGDIIGDIRQAHCNISEIK
WEKTLQRVSEKLREHFNKTIIFNQSSGGDLEITTHSFNCGGEFFYCNTSDLFFNKTFN
ETYSTGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNITGLLLTRDG
GGNNSTETETFRPGGGNMRDNWRSELYKYKVVEVKPLGIAPTEARRRVVQRERRAVVG
LGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWG
IKQLQARVLAIERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYNEIWDNMTWMQ
WDREIDNYTDTIYKLLEVSQKQQESNEKDLLALDSWNNLWNWFDISKWLWYIKIFIMI
VGGLIGLRIIFAVLSLVNRVRQGYSPLSFQTLTPNPRELDRLGGIEEEGGEQDRGRSV
RLVNGFLALVWDDLRSLCLFSYHHLRDFTLIAARAVELLGRSILKGLQRGWEALKYLG
SLVQYWGLELKGSAISLLDTIAIAVAEGTDRIIEFLQRIVRAILHIPRRIRQGFEAAL
Q"
BASE COUNT 921 a 437 c 595 g 621 t
ORIGIN
1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc
61 ttttggatgc taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg
121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagaa
181 gtacataatg tctgggctac acatgcttgc gtacccacag accccaaccc acaagaaatg
241 gttttggaaa atgtaacaga aaattttaac atgtggaaaa atgacatggt ggatcagatg
301 catgaggata taatcagtct atgggatcaa agcctcaaac catgtgtaaa attaacccca
361 ctctgtgtca ctctaaattg tacaactgca aagggtatta atagtaatga caatgcaaat
421 gctactaaaa aaccaaatga agaaataaaa aattgctctt tcaatacaat cacagaggta
481 agagataagc aaaagaaaga atatgcactc ttttatagac ttgatatagt accacttagt
541 ggggagggta ataacaacag taaatataga ttaataaact gtaatacctc agtcataaca
601 caagcctgtc caaaggtcac ttttgaccca attcctatac attattgtgc tccagctggt
661 tatgcgattc taaagtgtaa taataagaca ttcaatggca caggaccatg caataatgtc
721 agcacagtac aatgtacaca tggaattaag ccagtagttt caactcaact attgttaaat
781 ggtagcctag cagaagaaga gataataatt agatctgaaa acctgacaga caatgtcaaa
841 acaataatag tacatctcaa tgaatctgta gagattagtt gtacaagacc caacaataat
901 acaagaaaaa gtgtaagaat aggaccagga caaacattct atgcaacagg agacataata
961 ggagatataa gacaagcaca ttgtaacatt agtgaaatta aatgggagaa aactttacaa
1021 agagtaagtg aaaaattgag agaacacttc aataagacaa taatatttaa tcaatcctca
1081 ggaggggacc tagaaattac aacacatagc tttaattgtg gaggagaatt tttctattgc
1141 aatacatcag atctgttttt taataagaca tttaatgaga catatagtac aggaagtaat
1201 tcaacaaatt caaccatcac actcccatgc agaataaagc aaattataaa catgtggcag
1261 gaggtgggtc gagcaatgta tgcctctcct attgcaggag aaataacatg taaatcaaat
1321 atcacaggac tactattgac acgtgatgga ggaggaaaca acagtacaga gacagagaca
1381 ttcagacctg gaggaggaaa tatgagggac aactggagaa gtgaattata taaatataaa
1441 gtggtagaag ttaagccatt aggaatagca cccactgaag caagaaggag agtggtgcag
1501 agagagagaa gagcagtagt gggattagga gctgtgttcc ttgggttctt gggagcagca
1561 ggaagcacta tgggcgcagc atcaataacg ctgacggtac aggccagaca attattgtct
1621 ggtatagtgc aacagcaaag caatttgctg agggctatag aggcgcaaca gcatatgttg
1681 caactcacgg tctggggcat taagcagctc caggcaagag tcctggccat agagagatac
1741 ctaaaggatc aacagctcct agggatgtgg ggatgctctg gaaaactcat ctgcaccact
1801 aatgtgtatt ggaactctag ttggagtaat aaaacttaca atgaaatttg ggataacatg
1861 acatggatgc agtgggatag agaaattgat aactacacag acacaatata caagctgctt
1921 gaagtctcgc aaaaacagca ggagagcaat gaaaaagatt tactagcatt ggacagttgg
1981 aacaatctgt ggaattggtt tgacatatca aagtggctgt ggtatataaa aatattcata
2041 atgatagtag gaggcttaat aggtttaaga ataatttttg ctgtgctctc gctagtgaat
2101 agagttaggc agggatactc acctttgtca tttcagaccc ttaccccaaa cccgagggaa
2161 ctcgacaggc tcggaggaat cgaagaagaa ggtggagagc aagacagagg cagatccgta
2221 cgcttagtga acggattctt agcacttgtc tgggacgacc tgcggagcct gtgcctcttc
2281 agctaccacc acttgagaga cttcacattg attgcagcga gagcagtgga acttctggga
2341 cgcagcattc tcaagggact acagaggggg tgggaagccc ttaagtatct gggaagtctt
2401 gtgcagtact ggggtctgga actaaaaggg agtgctatta gtctgcttga taccatagca
2461 atagcagtag ctgaaggaac agataggatt atagaattct tacaaagaat tgttagagct
2521 atcctccaca tacctagaag aataagacag ggctttgaag cagctttgca ataa
//
last modified: Tue May 31 10:56 2022