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LOCUS	    KF996633		    2574 bp    RNA     linear	VRL 23-FEB-2014
DEFINITION  HIV-1 isolate CAP256.8mo.23 from South Africa envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   KF996633
VERSION     KF996633.1 GI:585635591
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2574)
            Show all sequences for reference 1
  AUTHORS   Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
	    DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
	    Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
	    Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
	    McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
	    Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
	    Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
	    Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
	    Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
	    Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
	    Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
	    Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
	    Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
	    Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
	    Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
	    Young,A.
  TITLE     Developmental pathway for potent V1V2-directed HIV-neutralizing
	    antibodies.
  JOURNAL   Nature.. 509(7498); 55-62 (2014)
  PUBMED    24590074
REFERENCE   2 (bases 1 to 2574)
            Show all sequences for reference 2
  AUTHORS   Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
	    for Communicable Diseases, 1 Modderfontein Road, Sandringham,
	    Johannesburg, Gauteng 2131, South Africa
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2574
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP256.8mo.23"
		     /isolation_source="34 weeks post-infection plasma sample"
		     /host="Homo sapiens; female"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="22-Mar-2006"
		     /note="subtype: C"
     gene	     1..2574
		     /gene="env"
     CDS	     1..2574
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AHJ58948.1"
		     /db_xref="GI:585635592"
		     /translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
		     KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNDMVDQMHE
		     DIISLWDQSLKPCVKLTPLCVTLNCTTAKGINSNDNANATKKPNEEIKNCSFNTITEV
		     RDKQKKEYALFYRLDIVPLSGEGNNNSKYRLINCNTSVITQACPKVTFDPIPIHYCAP
		     AGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLT
		     DNVKTIIVHLNESVEISCTRPNNNTRKSVRIGPGQTFYATGDIIGDIRQAHCNISEIK
		     WEKTLQRVSEKLREHFNKTIIFNQSSGGDLEITTHSFNCGGEFFYCNTSDLFFNKTFN
		     ETYSTGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNITGLLLTRDG
		     GGNNSTETETFRPGGGNMRDNWRSELYKYKVVEVKPLGIAPTEARRRVVQRERRAVVG
		     LGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWG
		     IKQLQARVLAIERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYNEIWDNMTWMQ
		     WDREIDNYTDTIYKLLEVSQKQQESNEKDLLALDSWNNLWNWFDISKWLWYIKIFIMI
		     VGGLIGLRIIFAVLSLVNRVRQGYSPLSFQTLTPNPRELDRLGGIEEEGGEQDRGRSV
		     RLVNGFLALVWDDLRSLCLFSYHHLRDFTLIAARAVELLGRSILKGLQRGWEALKYLG
		     SLVQYWGLELKGSAISLLDTIAIAVAEGTDRIIEFLQRIVRAILHIPRRIRQGFEAAL
		     Q"
BASE COUNT	921 a	 437 c	  595 g    621 t
ORIGIN
       1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgc taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg 
     121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagaa 
     181 gtacataatg tctgggctac acatgcttgc gtacccacag accccaaccc acaagaaatg 
     241 gttttggaaa atgtaacaga aaattttaac atgtggaaaa atgacatggt ggatcagatg 
     301 catgaggata taatcagtct atgggatcaa agcctcaaac catgtgtaaa attaacccca 
     361 ctctgtgtca ctctaaattg tacaactgca aagggtatta atagtaatga caatgcaaat 
     421 gctactaaaa aaccaaatga agaaataaaa aattgctctt tcaatacaat cacagaggta 
     481 agagataagc aaaagaaaga atatgcactc ttttatagac ttgatatagt accacttagt 
     541 ggggagggta ataacaacag taaatataga ttaataaact gtaatacctc agtcataaca 
     601 caagcctgtc caaaggtcac ttttgaccca attcctatac attattgtgc tccagctggt 
     661 tatgcgattc taaagtgtaa taataagaca ttcaatggca caggaccatg caataatgtc 
     721 agcacagtac aatgtacaca tggaattaag ccagtagttt caactcaact attgttaaat 
     781 ggtagcctag cagaagaaga gataataatt agatctgaaa acctgacaga caatgtcaaa 
     841 acaataatag tacatctcaa tgaatctgta gagattagtt gtacaagacc caacaataat 
     901 acaagaaaaa gtgtaagaat aggaccagga caaacattct atgcaacagg agacataata 
     961 ggagatataa gacaagcaca ttgtaacatt agtgaaatta aatgggagaa aactttacaa 
    1021 agagtaagtg aaaaattgag agaacacttc aataagacaa taatatttaa tcaatcctca 
    1081 ggaggggacc tagaaattac aacacatagc tttaattgtg gaggagaatt tttctattgc 
    1141 aatacatcag atctgttttt taataagaca tttaatgaga catatagtac aggaagtaat 
    1201 tcaacaaatt caaccatcac actcccatgc agaataaagc aaattataaa catgtggcag 
    1261 gaggtgggtc gagcaatgta tgcctctcct attgcaggag aaataacatg taaatcaaat 
    1321 atcacaggac tactattgac acgtgatgga ggaggaaaca acagtacaga gacagagaca 
    1381 ttcagacctg gaggaggaaa tatgagggac aactggagaa gtgaattata taaatataaa 
    1441 gtggtagaag ttaagccatt aggaatagca cccactgaag caagaaggag agtggtgcag 
    1501 agagagagaa gagcagtagt gggattagga gctgtgttcc ttgggttctt gggagcagca 
    1561 ggaagcacta tgggcgcagc atcaataacg ctgacggtac aggccagaca attattgtct 
    1621 ggtatagtgc aacagcaaag caatttgctg agggctatag aggcgcaaca gcatatgttg 
    1681 caactcacgg tctggggcat taagcagctc caggcaagag tcctggccat agagagatac 
    1741 ctaaaggatc aacagctcct agggatgtgg ggatgctctg gaaaactcat ctgcaccact 
    1801 aatgtgtatt ggaactctag ttggagtaat aaaacttaca atgaaatttg ggataacatg 
    1861 acatggatgc agtgggatag agaaattgat aactacacag acacaatata caagctgctt 
    1921 gaagtctcgc aaaaacagca ggagagcaat gaaaaagatt tactagcatt ggacagttgg 
    1981 aacaatctgt ggaattggtt tgacatatca aagtggctgt ggtatataaa aatattcata 
    2041 atgatagtag gaggcttaat aggtttaaga ataatttttg ctgtgctctc gctagtgaat 
    2101 agagttaggc agggatactc acctttgtca tttcagaccc ttaccccaaa cccgagggaa 
    2161 ctcgacaggc tcggaggaat cgaagaagaa ggtggagagc aagacagagg cagatccgta 
    2221 cgcttagtga acggattctt agcacttgtc tgggacgacc tgcggagcct gtgcctcttc 
    2281 agctaccacc acttgagaga cttcacattg attgcagcga gagcagtgga acttctggga 
    2341 cgcagcattc tcaagggact acagaggggg tgggaagccc ttaagtatct gggaagtctt 
    2401 gtgcagtact ggggtctgga actaaaaggg agtgctatta gtctgcttga taccatagca 
    2461 atagcagtag ctgaaggaac agataggatt atagaattct tacaaagaat tgttagagct 
    2521 atcctccaca tacctagaag aataagacag ggctttgaag cagctttgca ataa
//
last modified: Tue May 31 10:56 2022


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