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LOCUS	    KF996602		    2257 bp    RNA     linear	VRL 23-FEB-2014
DEFINITION  HIV-1 isolate CAP256.5mo.2 from South Africa envelope glycoprotein
	    (env) gene, partial cds
ACCESSION   KF996602
VERSION     KF996602.1 GI:585635529
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2257)
            Show all sequences for reference 1
  AUTHORS   Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
	    DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
	    Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
	    Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
	    McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
	    Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
	    Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
	    Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
	    Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
	    Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
	    Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
	    Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
	    Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
	    Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
	    Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
	    Young,A.
  TITLE     Developmental pathway for potent V1V2-directed HIV-neutralizing
	    antibodies.
  JOURNAL   Nature.. 509(7498); 55-62 (2014)
  PUBMED    24590074
REFERENCE   2 (bases 1 to 2257)
            Show all sequences for reference 2
  AUTHORS   Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
	    for Communicable Diseases, 1 Modderfontein Road, Sandringham,
	    Johannesburg, Gauteng 2131, South Africa
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2257
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP256.5mo.2"
		     /isolation_source="23 weeks post-infection plasma sample"
		     /host="Homo sapiens; female"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="05-Jan-2006"
		     /note="subtype: C"
     gene	     1..>2257
		     /gene="env"
     CDS	     1..>2257
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AHJ58917.1"
		     /db_xref="GI:585635530"
		     /translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
		     KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQELVLKNVTENFNMWKNDMVDQMHE
		     DIISLWDQSLKPCVKLTPLCVTLNCTTAKGINSTDNANATKKPNEEIKNCSFNTITEV
		     RDKQKKEYALFYRLDLVSLNEGDSEGNSSRSGNFSTYRLINCNTSVITQACPKVTFDP
		     IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEI
		     IIRSENLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQTFYATGDIIGDIRQA
		     HCNISEIKWEKTLQRVSEKLREHFNKTIIFNQSSGGDLEITTHSFNCGGEFFYCNTSD
		     LFFNKTFNETYSTGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNIT
		     GLLLTRDGGGNNSTETETFRPGGGNMRDNWRSELYKYKVVEVKPLGIAPTNVYWNSSW
		     SNKTYNEIWDNMTWMQWDREIDNYTDTIYKLLEVSQKQQESNEKDLLALDSWNNLWNW
		     FDISKWLWYIKIFIMIVGGLIGLRIIFAVLSLVNRVRQGYSPLSFQTLTPNPRELDRL
		     GGIEEEGGEQDRDRSIRLVSGFFSLAWNDLRSLCLFCYHRLRDFILIAGRAVELLGRS
		     SLQGLQRGWEILKYLGSLVQYWGLELKKSAINLFDTLAIVVAEGTDRIIEFLQRSVRA
		     ILHIPRRIRQGF"
BASE COUNT	827 a	 371 c	  491 g    568 t
ORIGIN
       1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgt taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg 
     121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagag 
     181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaaccc acaagaattg 
     241 gttttgaaaa atgtaacaga aaattttaac atgtggaaaa atgatatggt agatcagatg 
     301 catgaagata taatcagttt atgggatcaa agcctcaagc catgtgtaaa attaacccca 
     361 ctctgtgtca ctctaaattg tacaactgca aagggtatta atagtactga caatgcaaat 
     421 gctactaaaa aaccaaatga agaaataaaa aattgctctt tcaatacaat cacagaggta 
     481 agagataagc aaaagaaaga atatgcactc ttttatagac ttgatctagt atcacttaat 
     541 gagggggact ctgaagggaa ctctagcaga tctggcaact ttagtacgta tagattaata 
     601 aactgtaata cctcagtcat aacacaagcc tgtccaaagg tcacttttga cccaattcct 
     661 atacattatt gtgctccagc tggttatgcg attctcaagt gtaataataa gacattcaat 
     721 ggcacaggac catgcaataa tgtcagcaca gtacaatgta cacatggaat taagccagta 
     781 gtttcaactc aactattgtt aaatggtagc ctagcagaag aagagataat aattagatca 
     841 gaaaacctga cagacaatgt caaaacaata atagtacatc tcaatgaatc tgtagagatt 
     901 aattgtacaa gacccaacaa taatacaaga aaaagtataa gaataggacc aggacaaaca 
     961 ttctatgcaa caggagacat aataggagat ataagacaag cacattgtaa cattagtgaa 
    1021 attaaatggg agaaaacttt acaaagagta agtgaaaaat tgagagaaca cttcaataag 
    1081 acaataatat ttaatcaatc ctcaggaggg gacctagaaa ttacaacaca tagctttaat 
    1141 tgtggaggag aatttttcta ttgcaataca tcagatctgt tttttaataa gacatttaat 
    1201 gagacatata gtacaggaag taattcaaca aattcaacca tcacactccc atgcagaata 
    1261 aagcaaatta taaacatgtg gcaggaggtg ggtcgagcaa tgtatgcctc tcctattgca 
    1321 ggagaaataa catgtaaatc aaatatcaca ggactactat tgacacgtga tggaggagga 
    1381 aacaacagta cagagacaga gacattcaga cctggaggag gaaatatgag ggacaactgg 
    1441 agaagtgaat tatataaata taaagtggta gaagttaagc cattaggaat agcacccact 
    1501 aatgtgtatt ggaactctag ttggagtaat aaaacttaca atgaaatttg ggataacatg 
    1561 acatggatgc agtgggatag agaaattgat aactacacag acacaatata caagctgctt 
    1621 gaagtctcgc aaaaacagca ggagagcaat gaaaaagatt tactagcatt ggacagttgg 
    1681 aacaatctgt ggaattggtt tgacatatca aagtggctgt ggtatataaa aatattcata 
    1741 atgatagtag gaggcttaat aggtttaaga ataatttttg ctgtgctctc gctagtgaat 
    1801 agagttaggc agggatactc acctttgtca tttcagaccc ttaccccaaa cccgagggaa 
    1861 ctcgacaggc tcggaggaat cgaagaagaa ggtggagagc aagacagaga cagatccata 
    1921 agattagtga gcggattctt ctcacttgcc tggaacgacc tgcggagcct gtgcctcttc 
    1981 tgctaccacc gattgagaga cttcatatta attgcaggga gagcagtgga acttctggga 
    2041 cgcagcagtc tccagggact acagaggggg tgggaaatcc ttaagtacct gggaagtctt 
    2101 gtgcagtatt ggggtctaga gctaaaaaag agtgctatta atctgtttga taccttagca 
    2161 atagtagtag ctgaaggaac agatagaatt atagaattct tacaaagaag tgttagagct 
    2221 atcctccaca tacctagaag aataagacag ggctttg
//
last modified: Tue May 31 10:56 2022


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