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LOCUS KF996602 2257 bp RNA linear VRL 23-FEB-2014
DEFINITION HIV-1 isolate CAP256.5mo.2 from South Africa envelope glycoprotein
(env) gene, partial cds
ACCESSION KF996602
VERSION KF996602.1 GI:585635529
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2257)
Show all sequences for reference 1
AUTHORS Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
Young,A.
TITLE Developmental pathway for potent V1V2-directed HIV-neutralizing
antibodies.
JOURNAL Nature.. 509(7498); 55-62 (2014)
PUBMED 24590074
REFERENCE 2 (bases 1 to 2257)
Show all sequences for reference 2
AUTHORS Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
for Communicable Diseases, 1 Modderfontein Road, Sandringham,
Johannesburg, Gauteng 2131, South Africa
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2257
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP256.5mo.2"
/isolation_source="23 weeks post-infection plasma sample"
/host="Homo sapiens; female"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="05-Jan-2006"
/note="subtype: C"
gene 1..>2257
/gene="env"
CDS 1..>2257
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AHJ58917.1"
/db_xref="GI:585635530"
/translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQELVLKNVTENFNMWKNDMVDQMHE
DIISLWDQSLKPCVKLTPLCVTLNCTTAKGINSTDNANATKKPNEEIKNCSFNTITEV
RDKQKKEYALFYRLDLVSLNEGDSEGNSSRSGNFSTYRLINCNTSVITQACPKVTFDP
IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEI
IIRSENLTDNVKTIIVHLNESVEINCTRPNNNTRKSIRIGPGQTFYATGDIIGDIRQA
HCNISEIKWEKTLQRVSEKLREHFNKTIIFNQSSGGDLEITTHSFNCGGEFFYCNTSD
LFFNKTFNETYSTGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNIT
GLLLTRDGGGNNSTETETFRPGGGNMRDNWRSELYKYKVVEVKPLGIAPTNVYWNSSW
SNKTYNEIWDNMTWMQWDREIDNYTDTIYKLLEVSQKQQESNEKDLLALDSWNNLWNW
FDISKWLWYIKIFIMIVGGLIGLRIIFAVLSLVNRVRQGYSPLSFQTLTPNPRELDRL
GGIEEEGGEQDRDRSIRLVSGFFSLAWNDLRSLCLFCYHRLRDFILIAGRAVELLGRS
SLQGLQRGWEILKYLGSLVQYWGLELKKSAINLFDTLAIVVAEGTDRIIEFLQRSVRA
ILHIPRRIRQGF"
BASE COUNT 827 a 371 c 491 g 568 t
ORIGIN
1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc
61 ttttggatgt taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg
121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagag
181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaaccc acaagaattg
241 gttttgaaaa atgtaacaga aaattttaac atgtggaaaa atgatatggt agatcagatg
301 catgaagata taatcagttt atgggatcaa agcctcaagc catgtgtaaa attaacccca
361 ctctgtgtca ctctaaattg tacaactgca aagggtatta atagtactga caatgcaaat
421 gctactaaaa aaccaaatga agaaataaaa aattgctctt tcaatacaat cacagaggta
481 agagataagc aaaagaaaga atatgcactc ttttatagac ttgatctagt atcacttaat
541 gagggggact ctgaagggaa ctctagcaga tctggcaact ttagtacgta tagattaata
601 aactgtaata cctcagtcat aacacaagcc tgtccaaagg tcacttttga cccaattcct
661 atacattatt gtgctccagc tggttatgcg attctcaagt gtaataataa gacattcaat
721 ggcacaggac catgcaataa tgtcagcaca gtacaatgta cacatggaat taagccagta
781 gtttcaactc aactattgtt aaatggtagc ctagcagaag aagagataat aattagatca
841 gaaaacctga cagacaatgt caaaacaata atagtacatc tcaatgaatc tgtagagatt
901 aattgtacaa gacccaacaa taatacaaga aaaagtataa gaataggacc aggacaaaca
961 ttctatgcaa caggagacat aataggagat ataagacaag cacattgtaa cattagtgaa
1021 attaaatggg agaaaacttt acaaagagta agtgaaaaat tgagagaaca cttcaataag
1081 acaataatat ttaatcaatc ctcaggaggg gacctagaaa ttacaacaca tagctttaat
1141 tgtggaggag aatttttcta ttgcaataca tcagatctgt tttttaataa gacatttaat
1201 gagacatata gtacaggaag taattcaaca aattcaacca tcacactccc atgcagaata
1261 aagcaaatta taaacatgtg gcaggaggtg ggtcgagcaa tgtatgcctc tcctattgca
1321 ggagaaataa catgtaaatc aaatatcaca ggactactat tgacacgtga tggaggagga
1381 aacaacagta cagagacaga gacattcaga cctggaggag gaaatatgag ggacaactgg
1441 agaagtgaat tatataaata taaagtggta gaagttaagc cattaggaat agcacccact
1501 aatgtgtatt ggaactctag ttggagtaat aaaacttaca atgaaatttg ggataacatg
1561 acatggatgc agtgggatag agaaattgat aactacacag acacaatata caagctgctt
1621 gaagtctcgc aaaaacagca ggagagcaat gaaaaagatt tactagcatt ggacagttgg
1681 aacaatctgt ggaattggtt tgacatatca aagtggctgt ggtatataaa aatattcata
1741 atgatagtag gaggcttaat aggtttaaga ataatttttg ctgtgctctc gctagtgaat
1801 agagttaggc agggatactc acctttgtca tttcagaccc ttaccccaaa cccgagggaa
1861 ctcgacaggc tcggaggaat cgaagaagaa ggtggagagc aagacagaga cagatccata
1921 agattagtga gcggattctt ctcacttgcc tggaacgacc tgcggagcct gtgcctcttc
1981 tgctaccacc gattgagaga cttcatatta attgcaggga gagcagtgga acttctggga
2041 cgcagcagtc tccagggact acagaggggg tgggaaatcc ttaagtacct gggaagtctt
2101 gtgcagtatt ggggtctaga gctaaaaaag agtgctatta atctgtttga taccttagca
2161 atagtagtag ctgaaggaac agatagaatt atagaattct tacaaagaag tgttagagct
2221 atcctccaca tacctagaag aataagacag ggctttg
//
last modified: Tue May 31 10:56 2022