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LOCUS	    KF996587		    2598 bp    RNA     linear	VRL 23-FEB-2014
DEFINITION  HIV-1 isolate CAP256.5mo.19 from South Africa envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   KF996587
VERSION     KF996587.1 GI:585635499
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2598)
            Show all sequences for reference 1
  AUTHORS   Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
	    DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
	    Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
	    Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
	    McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
	    Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
	    Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
	    Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
	    Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
	    Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
	    Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
	    Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
	    Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
	    Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
	    Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
	    Young,A.
  TITLE     Developmental pathway for potent V1V2-directed HIV-neutralizing
	    antibodies.
  JOURNAL   Nature.. 509(7498); 55-62 (2014)
  PUBMED    24590074
REFERENCE   2 (bases 1 to 2598)
            Show all sequences for reference 2
  AUTHORS   Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
	    for Communicable Diseases, 1 Modderfontein Road, Sandringham,
	    Johannesburg, Gauteng 2131, South Africa
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2598
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP256.5mo.19"
		     /isolation_source="23 weeks post-infection plasma sample"
		     /host="Homo sapiens; female"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="05-Jan-2006"
		     /note="subtype: C"
     gene	     1..2598
		     /gene="env"
     CDS	     1..2598
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AHJ58902.1"
		     /db_xref="GI:585635500"
		     /translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
		     KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQELVLKNVTENFNMWKNDMVDQMHE
		     DIISLWDQSLKPCVKLTPLCVTLNCTTAKGINSTDNANATKKPNEEIKNCSFNTITEV
		     RDKQKKEYALFYRLDLVSLNEGDSEGNSSRSGNFSTYRLINCNTSVITQACPKVTFDP
		     IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEI
		     IIRSENLTDNVKTIIVHLNESVEITCTRPNNNTRKSVRIGPGQTFYATGDIIGDIRQA
		     HCNISEIKWEKTLQRVSEKLREHFNKTIIFNQSSGGDLEIATHSFNCGGEFFYCNTSD
		     LFFNKTFNETYSTGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNIT
		     GLLLTRDGGGNNSTETETFRPGGGNMRDNWRSELYKYKVVEVKPLGIAPTEARRRVVQ
		     RERRAVVGLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQH
		     MLQLTVWGIKQLQARVLAIERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYNEI
		     WDNMTWMQWDREIDNYTDTIYKLLEVSQKQQESNEKDLLALDSWNNLWNWFDISKWLW
		     YIKIFIMIVGGLIGLRIIFAVLSLVNRVRQGYSPLSFQTLTPNSRELDRLGGIEEEGG
		     EQDRDRSIRLVSGFFSLAWDDLRSLCLFCYHRLRDFILIAGRAVELLGRSSLQGLQRG
		     WEILKYLGSLVQYWGLELKKSAINLFDTLAIVVAEGTDRIIEFLQRIVRAILHIPRRI
		     RQGFEAALQ"
BASE COUNT	927 a	 440 c	  595 g    636 t
ORIGIN
       1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgc taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg 
     121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagag 
     181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaaccc acaagaattg 
     241 gttttgaaaa atgtaacaga aaattttaac atgtggaaaa atgacatggt ggatcagatg 
     301 catgaggata taatcagtct atgggatcaa agcctcaaac catgtgtaaa attaacccca 
     361 ctctgtgtca ctctaaattg tacaactgca aagggtatta atagtactga caatgcaaat 
     421 gctactaaaa aaccaaatga agaaataaaa aattgctctt tcaatacaat cacagaggta 
     481 agagataagc aaaagaaaga atatgcactc ttttatagac ttgatctagt atcacttaat 
     541 gagggggact ctgaagggaa ctctagcaga tctggcaact ttagtacgta tagattaata 
     601 aactgtaata cctcagtcat aacacaagcc tgtccaaagg tcacttttga cccaattcct 
     661 atacattatt gtgctccagc tggttatgcg attctaaagt gtaataataa gacattcaat 
     721 ggcacaggac catgcaataa tgtcagcaca gtacaatgta cacatggaat taagccagta 
     781 gtttcaactc aactattgtt aaatggtagc ctagcagaag aagagataat aattagatca 
     841 gaaaacctga cagacaatgt caaaacaata atagtacatc tcaatgaatc tgtagagatt 
     901 acttgtacaa gacccaacaa taatacaaga aaaagtgtaa gaataggacc aggacaaaca 
     961 ttctatgcaa caggagacat aataggagat ataagacaag cacattgtaa cattagtgaa 
    1021 attaaatggg agaaaacttt acaaagagta agtgaaaaat tgagagaaca cttcaataag 
    1081 acaataatat ttaatcaatc ctcaggaggg gacctagaaa ttgcaacaca tagctttaat 
    1141 tgtggaggag aatttttcta ttgcaataca tcagatctgt tttttaataa gacatttaat 
    1201 gagacatata gtacaggaag taattcaaca aattcaacca tcacactccc atgcagaata 
    1261 aagcaaatta taaacatgtg gcaggaggtg ggtcgagcaa tgtatgcctc tcctattgca 
    1321 ggagaaataa catgtaaatc aaatatcaca ggactactat tgacacgtga tggaggagga 
    1381 aacaacagta cagagacaga gacattcaga cctggaggag gaaatatgag ggacaactgg 
    1441 agaagtgaat tatataaata taaagtggta gaagttaagc cattaggaat agcacccact 
    1501 gaagcaagaa ggagagtggt gcagagagag agaagagcag tagtgggatt aggagctgtg 
    1561 ttccttgggt tcttgggagc agcaggaagc actatgggcg cagcatcaat aacgctgacg 
    1621 gtacaggcca gacaattatt gtctggtata gtgcaacagc aaagcaattt gctgagggct 
    1681 atagaggcgc aacagcatat gttgcaactc acggtctggg gcattaagca gctccaggca 
    1741 agagtcctgg ccatagaaag atacctaaag gatcaacagc tcctagggat gtggggatgc 
    1801 tctggaaaac tcatctgcac cactaatgtg tattggaact ctagttggag taataaaact 
    1861 tacaatgaaa tttgggataa catgacatgg atgcagtggg atagagaaat tgataactac 
    1921 acagacacaa tatacaagct gcttgaagtc tcgcaaaaac agcaggagag caatgaaaaa 
    1981 gatttactag cattggacag ttggaacaat ctgtggaatt ggtttgacat atcaaaatgg 
    2041 ctgtggtata taaaaatatt cataatgata gtaggaggct tgataggctt aagaataatt 
    2101 tttgctgtgc tctcgctagt gaatagagtt aggcagggat actcaccttt gtcatttcag 
    2161 acccttaccc caaactcgag ggaactcgac aggctcggag gaatcgaaga agaaggtgga 
    2221 gagcaagaca gagacagatc cataagatta gtgagcggat tcttctcact tgcctgggac 
    2281 gacctgcgga gcctgtgcct cttctgctac caccgattga gagacttcat attaattgca 
    2341 gggagagcag tggaacttct gggacgcagc agtctccagg gactacaaag gggttgggaa 
    2401 atccttaagt atctgggaag tcttgtgcag tattggggtc tagagctaaa aaagagtgct 
    2461 attaatctgt ttgatacctt agcaatagta gtagctgaag gaacagatag aattatagaa 
    2521 ttcttacaaa gaattgttag agctatcctc cacataccta gaagaataag acagggcttt 
    2581 gaagcagctt tgcaataa
//
last modified: Tue May 31 10:56 2022


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