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LOCUS KF996587 2598 bp RNA linear VRL 23-FEB-2014
DEFINITION HIV-1 isolate CAP256.5mo.19 from South Africa envelope glycoprotein
(env) gene, complete cds
ACCESSION KF996587
VERSION KF996587.1 GI:585635499
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2598)
Show all sequences for reference 1
AUTHORS Doria-Rose,N.A., Schramm,C.A., Gorman,J., Moore,P.L., Bhiman,J.N.,
DeKosky,B.J., Ernandes,M.J., Georgiev,I.S., Kim,H.J., Pancera,M.,
Staupe,R.P., Altae-Tran,H.R., Bailer,R.T., Crooks,E.T., Cupo,A.,
Druz,A., Garrett,N.J., Hoi,K.H., Kong,R., Louder,M.K., Longo,N.S.,
McKee,K., Nonyane,M., O'Dell,S., Roark,R.S., Rudicell,R.S.,
Schmidt,S.D., Sheward,D.J., Soto,C., Wibmer,C.K., Yang,Y.,
Zhang,Z., Mullikin,J.C., Binley,J.M., Sanders,R.W., Wilson,I.A.,
Moore,J.P., Ward,A.B., Georgiou,G., Williamson,C., Abdool
Karim,S.S., Morris,L., Kwong,P.D., Shapiro,L., Mascola,J.R.,
Becker,J., Benjamin,B., Blakesley,R., Bouffard,G., Brooks,S.,
Coleman,H., Dekhtyar,M., Gregory,M., Guan,X., Gupta,J., Han,J.,
Hargrove,A., Ho,S.-l., Johnson,T., Legaspi,R., Lovett,S.,
Maduro,Q., Masiello,C., Maskeri,B., McDowell,J., Montemayor,C.,
Mullikin,J., Park,M., Riebow,N., Schandler,K., Schmidt,B.,
Sison,C., Stantripop,M., Thomas,J., Thomas,P., Vemulapalli,M. and
Young,A.
TITLE Developmental pathway for potent V1V2-directed HIV-neutralizing
antibodies.
JOURNAL Nature.. 509(7498); 55-62 (2014)
PUBMED 24590074
REFERENCE 2 (bases 1 to 2598)
Show all sequences for reference 2
AUTHORS Moore,P.L., Bhiman,J.N., Williamson,C. and Sheward,D.J.
TITLE Direct Submission
JOURNAL Submitted (23-DEC-2013) Centre for HIV and STIs, National Institute
for Communicable Diseases, 1 Modderfontein Road, Sandringham,
Johannesburg, Gauteng 2131, South Africa
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2598
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP256.5mo.19"
/isolation_source="23 weeks post-infection plasma sample"
/host="Homo sapiens; female"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="05-Jan-2006"
/note="subtype: C"
gene 1..2598
/gene="env"
CDS 1..2598
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AHJ58902.1"
/db_xref="GI:585635500"
/translation="MTVTGTWRNYQQWWIWGILGFWMLMICNGLWVTVYYGVPVWREA
KTTLFCASDAKSYEKEVHNVWATHACVPTDPNPQELVLKNVTENFNMWKNDMVDQMHE
DIISLWDQSLKPCVKLTPLCVTLNCTTAKGINSTDNANATKKPNEEIKNCSFNTITEV
RDKQKKEYALFYRLDLVSLNEGDSEGNSSRSGNFSTYRLINCNTSVITQACPKVTFDP
IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEI
IIRSENLTDNVKTIIVHLNESVEITCTRPNNNTRKSVRIGPGQTFYATGDIIGDIRQA
HCNISEIKWEKTLQRVSEKLREHFNKTIIFNQSSGGDLEIATHSFNCGGEFFYCNTSD
LFFNKTFNETYSTGSNSTNSTITLPCRIKQIINMWQEVGRAMYASPIAGEITCKSNIT
GLLLTRDGGGNNSTETETFRPGGGNMRDNWRSELYKYKVVEVKPLGIAPTEARRRVVQ
RERRAVVGLGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQH
MLQLTVWGIKQLQARVLAIERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYNEI
WDNMTWMQWDREIDNYTDTIYKLLEVSQKQQESNEKDLLALDSWNNLWNWFDISKWLW
YIKIFIMIVGGLIGLRIIFAVLSLVNRVRQGYSPLSFQTLTPNSRELDRLGGIEEEGG
EQDRDRSIRLVSGFFSLAWDDLRSLCLFCYHRLRDFILIAGRAVELLGRSSLQGLQRG
WEILKYLGSLVQYWGLELKKSAINLFDTLAIVVAEGTDRIIEFLQRIVRAILHIPRRI
RQGFEAALQ"
BASE COUNT 927 a 440 c 595 g 636 t
ORIGIN
1 atgacagtga cggggacatg gaggaattat caacaatggt ggatatgggg aatcttaggc
61 ttttggatgc taatgatttg taatggcttg tgggttacag tctactatgg ggtacctgtg
121 tggagagaag caaaaactac tctattttgt gcctcagacg ctaaatcata tgagaaagag
181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaaccc acaagaattg
241 gttttgaaaa atgtaacaga aaattttaac atgtggaaaa atgacatggt ggatcagatg
301 catgaggata taatcagtct atgggatcaa agcctcaaac catgtgtaaa attaacccca
361 ctctgtgtca ctctaaattg tacaactgca aagggtatta atagtactga caatgcaaat
421 gctactaaaa aaccaaatga agaaataaaa aattgctctt tcaatacaat cacagaggta
481 agagataagc aaaagaaaga atatgcactc ttttatagac ttgatctagt atcacttaat
541 gagggggact ctgaagggaa ctctagcaga tctggcaact ttagtacgta tagattaata
601 aactgtaata cctcagtcat aacacaagcc tgtccaaagg tcacttttga cccaattcct
661 atacattatt gtgctccagc tggttatgcg attctaaagt gtaataataa gacattcaat
721 ggcacaggac catgcaataa tgtcagcaca gtacaatgta cacatggaat taagccagta
781 gtttcaactc aactattgtt aaatggtagc ctagcagaag aagagataat aattagatca
841 gaaaacctga cagacaatgt caaaacaata atagtacatc tcaatgaatc tgtagagatt
901 acttgtacaa gacccaacaa taatacaaga aaaagtgtaa gaataggacc aggacaaaca
961 ttctatgcaa caggagacat aataggagat ataagacaag cacattgtaa cattagtgaa
1021 attaaatggg agaaaacttt acaaagagta agtgaaaaat tgagagaaca cttcaataag
1081 acaataatat ttaatcaatc ctcaggaggg gacctagaaa ttgcaacaca tagctttaat
1141 tgtggaggag aatttttcta ttgcaataca tcagatctgt tttttaataa gacatttaat
1201 gagacatata gtacaggaag taattcaaca aattcaacca tcacactccc atgcagaata
1261 aagcaaatta taaacatgtg gcaggaggtg ggtcgagcaa tgtatgcctc tcctattgca
1321 ggagaaataa catgtaaatc aaatatcaca ggactactat tgacacgtga tggaggagga
1381 aacaacagta cagagacaga gacattcaga cctggaggag gaaatatgag ggacaactgg
1441 agaagtgaat tatataaata taaagtggta gaagttaagc cattaggaat agcacccact
1501 gaagcaagaa ggagagtggt gcagagagag agaagagcag tagtgggatt aggagctgtg
1561 ttccttgggt tcttgggagc agcaggaagc actatgggcg cagcatcaat aacgctgacg
1621 gtacaggcca gacaattatt gtctggtata gtgcaacagc aaagcaattt gctgagggct
1681 atagaggcgc aacagcatat gttgcaactc acggtctggg gcattaagca gctccaggca
1741 agagtcctgg ccatagaaag atacctaaag gatcaacagc tcctagggat gtggggatgc
1801 tctggaaaac tcatctgcac cactaatgtg tattggaact ctagttggag taataaaact
1861 tacaatgaaa tttgggataa catgacatgg atgcagtggg atagagaaat tgataactac
1921 acagacacaa tatacaagct gcttgaagtc tcgcaaaaac agcaggagag caatgaaaaa
1981 gatttactag cattggacag ttggaacaat ctgtggaatt ggtttgacat atcaaaatgg
2041 ctgtggtata taaaaatatt cataatgata gtaggaggct tgataggctt aagaataatt
2101 tttgctgtgc tctcgctagt gaatagagtt aggcagggat actcaccttt gtcatttcag
2161 acccttaccc caaactcgag ggaactcgac aggctcggag gaatcgaaga agaaggtgga
2221 gagcaagaca gagacagatc cataagatta gtgagcggat tcttctcact tgcctgggac
2281 gacctgcgga gcctgtgcct cttctgctac caccgattga gagacttcat attaattgca
2341 gggagagcag tggaacttct gggacgcagc agtctccagg gactacaaag gggttgggaa
2401 atccttaagt atctgggaag tcttgtgcag tattggggtc tagagctaaa aaagagtgct
2461 attaatctgt ttgatacctt agcaatagta gtagctgaag gaacagatag aattatagaa
2521 ttcttacaaa gaattgttag agctatcctc cacataccta gaagaataag acagggcttt
2581 gaagcagctt tgcaataa
//
last modified: Tue May 31 10:56 2022