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LOCUS	    KF527157		    2577 bp    RNA     linear	VRL 02-SEP-2013
DEFINITION  HIV-1 isolate 4403wk0_E11 from Malawi envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   KF527157
VERSION     KF527157.1 GI:534826573
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2577)
            Show all sequences for reference 1
  AUTHORS   Permar,S.R., Salazar,M.G., Gao,F., Cai,F., Learn,G.H., Kalilani,L.,
	    Hahn,B.H., Shaw,G.M. and Salazar-Gonzalez,J.F.
  TITLE     Clonal amplification and maternal-infant transmission of
	    nevirapine-resistant HIV-1 variants in breast milk following
	    single-dose nevirapine prophylaxis
  JOURNAL   Retrovirology 10, 88 (2013)
  PUBMED    23941304
REFERENCE   2 (bases 1 to 2577)
            Show all sequences for reference 2
  AUTHORS   Permar,S., Salazar,M., Gao,F., Cai,F., Learn,G., Kalilani,L.,
	    Hahn,B., Shaw,G. and Salazar-Gonzalez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2013) Medicine, University of Alabama at
	    Birmingham, 720 20th Street South, Birmingham, AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 714904403 Sample city
	    Blantyre Patient Cohort CHAVI 009 Patient sex F Viral load 56200
	    Patient health status chronic infection Sample tissue plasma
	    Culture method uncultured Amplification Strategy single genome
	    amplification Patient comment Chronically HIV-infected Malawian
	    woman at parturition time Sample timepoint 0 weeks
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2577
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="4403wk0_E11"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="24-May-2008"
		     /note="woman received ntrapartum single-dose nevirapine
		     prophylaxis; subtype: C"
     gene	     1..2577
		     /gene="env"
     CDS	     1..2577
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGU36074.1"
		     /db_xref="GI:534826577"
		     /translation="MRVMGILKSWQPWGIWGILGFWMVLTCSVLGNLWVTVYYGVPVW
		     KEAKTTLFCASDAKAYEREAHNVWATHACVPTDPNPQELVLENVTENFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLDCKNSTENITDSGNVIDNGERKNCSFNITTEI
		     KDKKQNVYALFYKLDIVPLNEDNSSYYRLINCNTSAITQACPKVSFDPIPIHYCAPAG
		     YAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSKNLTDN
		     AKIIIVHLNESVEINCTRPGNNTRKSIRIGPGQTFYAPNGIIGNIRKAHCTIREKQWN
		     ETLIQVGKKLAELFPNKRIKFNSSSGGDLEITTHSFTCGGEFFYCNTSGLFNGTYDPR
		     DNNTMSNLSSSDNITLILPCKIKQIINMWQGVGKAIYAPPIAGNITCRSNITGLLLLR
		     DGGNTSDPEEIFRPGGGDMRDNWRSELYKYKVVEIKPLGVAPTKAKRRVVEREKRAVG
		     IGAVLLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWG
		     IKQLQARVLAIERYLKDQQLLGIWGCSGKLICTTSVPWNDSWSHNKSLQDIWDNMTWM
		     QWDKEINNYTNIIYRLLEESQSQQEKNEQDLLALDSWQNLWNWFSISKWLWYIKIFIM
		     IVGGLIGLRIIFAVLSIVNRARQGYSPLSFQTLTPSPRGPDRLGRIEEEGGEQDRDRS
		     IRLVSGFLALAWDDLRSLCLFLYHRLRDFLLVIARTVEILGRSSLRGLQRGWEALKYL
		     GNLVQYWGSEIKKSAISLFDTIAIAVAEGTDRIIETIQRIYRAICNIPVRIRQGFEAA
		     LL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AGU36073.1"
		     /db_xref="GI:534826576"
		     /translation="ESDGDIEELATMGDMGHLRLLDGVDL"
     gene	     <2140..2387
		     /gene="rev"
     CDS	     <2140..2387
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGU36072.1"
		     /db_xref="GI:534826575"
		     /translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILSTCLGRPAEP
		     VPLPLPPIERLSIGDSENGGNSGTQQSQGTTEGVGSP"
     gene	     <2140..2230
		     /gene="tat"
     CDS	     <2140..2230
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGU36071.1"
		     /db_xref="GI:534826574"
		     /translation="PLPQARGDPTGSEESKKKVESKTETDPFD"
BASE COUNT	903 a	 441 c	  606 g    627 t
ORIGIN
       1 atgagagtga tggggatatt gaagagttgg caaccatggg ggatatgggg catcttaggc 
      61 ttttggatgg tgttgacttg tagtgtacta gggaacttgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaaaactact ctattctgtg catcagatgc taaagcatat 
     181 gagagagaag cgcacaatgt ctgggctaca catgcctgtg tgcccacaga ccccaaccca 
     241 caagaactgg ttttggaaaa tgtaacagaa aactttaaca tgtggaaaaa tgacatggta 
     301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag 
     361 ctgaccccac tctgtgtcac tttagattgt aaaaatagta ctgaaaatat tactgatagc 
     421 gggaatgtta tagataatgg agaaaggaaa aattgctctt ttaatataac cacagaaata 
     481 aaagataaga aacagaacgt gtatgcactt ttttataaac ttgatatagt accacttaat 
     541 gaggacaaca gttcctacta tagactaata aattgtaata cctcagccat aacacaagcc 
     601 tgtccaaagg tctcttttga cccaattcct atacattatt gtgcaccagc tggttatgcg 
     661 attctaaagt gtaataataa gacattcaat gggacaggac catgtcataa tgtcagcaca 
     721 gtacaatgta cacatggaat taagccagtg gtatcaactc aactactgtt aaatggtagc 
     781 ctagcagaag aagagataat aattagatct aaaaatctga cagacaatgc caaaataata 
     841 atagtacacc ttaatgagtc tgtagagatt aattgtacaa gacccggcaa caatacaaga 
     901 aaaagtataa ggataggacc aggacaaaca ttctatgcac caaatggaat aataggaaac 
     961 ataagaaaag cacattgtac cattagggaa aagcagtgga acgaaacttt aatacaggta 
    1021 gggaaaaaat tagcagaact cttccctaat aaaagaataa agtttaattc atcctcagga 
    1081 ggggatctag aaatcacaac acatagcttt acttgtggag gagaattttt ctattgcaat 
    1141 acatcaggat tgtttaatgg cacatacgat cctagggata ataatacaat gagtaattta 
    1201 agctcaagtg acaacatcac actcatactc ccatgcaaaa taaagcaaat tataaacatg 
    1261 tggcaggggg taggaaaagc gatatatgct cctcccattg caggaaacat aacatgtaga 
    1321 tcaaatatca caggactact attgctacgt gatggaggaa atacaagtga cccagaagag 
    1381 atattcagac ctggaggagg agatatgagg gacaattgga gaagtgaatt atataaatac 
    1441 aaagtggtag aaattaagcc attgggagtg gcacccacta aggcaaaaag gagagtggtg 
    1501 gagagagaaa aaagagcagt gggaatagga gctgtactcc ttgggttctt aggagcggca 
    1561 ggaagcacta tgggcgcggc gtcaataacg ctgacggtac aggccagaca actgttgtct 
    1621 ggtatagtgc aacagcaaag caatttgctg agggctatag aggcgcaaca gcatatgttg 
    1681 caactcacgg tctggggcat taagcagctc caggctagag tcctggccat agaaagatac 
    1741 ctaaaggatc aacagctcct aggaatttgg ggctgctctg gaaaactcat ctgcaccact 
    1801 tctgtgcctt ggaatgacag ttggagtcat aataaatctc tacaagatat ttgggataac 
    1861 atgacctgga tgcagtggga taaagaaatt aataattaca caaatataat atacaggttg 
    1921 cttgaggaat cacaaagcca gcaggaaaaa aatgaacaag atttattagc attggacagt 
    1981 tggcaaaatc tgtggaattg gttcagcata tcaaaatggc tgtggtatat aaaaatattc 
    2041 ataatgatag taggaggctt gataggttta aggataattt ttgctgtgct ttctatagtg 
    2101 aatagagcta ggcagggata ctcacctttg tcgtttcaga cccttacccc aagcccgagg 
    2161 ggacccgaca ggctcggaag aatcgaagaa gaaggtggag agcaagacag agacagatcc 
    2221 attcgattag tgagcggatt cttagcactt gcctgggacg acctgcggag cctgtgcctc 
    2281 ttcctctacc accgattgag agactttcta ttggtgatag cgagaacggt ggaaattctg 
    2341 ggacgcagca gtctcagggg actacagagg gggtgggaag cccttaaata tctgggaaac 
    2401 cttgtgcagt attggggttc agagataaaa aagagtgcta ttagtctatt tgataccata 
    2461 gccatagcag tagctgaagg aacagatagg attatagaaa caatacaaag aatttataga 
    2521 gctatctgca acatacctgt aagaataaga cagggctttg aagcagcttt gctataa
//
last modified: Tue May 31 10:56 2022


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