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LOCUS KF527157 2577 bp RNA linear VRL 02-SEP-2013
DEFINITION HIV-1 isolate 4403wk0_E11 from Malawi envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION KF527157
VERSION KF527157.1 GI:534826573
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2577)
Show all sequences for reference 1
AUTHORS Permar,S.R., Salazar,M.G., Gao,F., Cai,F., Learn,G.H., Kalilani,L.,
Hahn,B.H., Shaw,G.M. and Salazar-Gonzalez,J.F.
TITLE Clonal amplification and maternal-infant transmission of
nevirapine-resistant HIV-1 variants in breast milk following
single-dose nevirapine prophylaxis
JOURNAL Retrovirology 10, 88 (2013)
PUBMED 23941304
REFERENCE 2 (bases 1 to 2577)
Show all sequences for reference 2
AUTHORS Permar,S., Salazar,M., Gao,F., Cai,F., Learn,G., Kalilani,L.,
Hahn,B., Shaw,G. and Salazar-Gonzalez,J.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2013) Medicine, University of Alabama at
Birmingham, 720 20th Street South, Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 714904403 Sample city
Blantyre Patient Cohort CHAVI 009 Patient sex F Viral load 56200
Patient health status chronic infection Sample tissue plasma
Culture method uncultured Amplification Strategy single genome
amplification Patient comment Chronically HIV-infected Malawian
woman at parturition time Sample timepoint 0 weeks
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2577
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="4403wk0_E11"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="24-May-2008"
/note="woman received ntrapartum single-dose nevirapine
prophylaxis; subtype: C"
gene 1..2577
/gene="env"
CDS 1..2577
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGU36074.1"
/db_xref="GI:534826577"
/translation="MRVMGILKSWQPWGIWGILGFWMVLTCSVLGNLWVTVYYGVPVW
KEAKTTLFCASDAKAYEREAHNVWATHACVPTDPNPQELVLENVTENFNMWKNDMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLDCKNSTENITDSGNVIDNGERKNCSFNITTEI
KDKKQNVYALFYKLDIVPLNEDNSSYYRLINCNTSAITQACPKVSFDPIPIHYCAPAG
YAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSKNLTDN
AKIIIVHLNESVEINCTRPGNNTRKSIRIGPGQTFYAPNGIIGNIRKAHCTIREKQWN
ETLIQVGKKLAELFPNKRIKFNSSSGGDLEITTHSFTCGGEFFYCNTSGLFNGTYDPR
DNNTMSNLSSSDNITLILPCKIKQIINMWQGVGKAIYAPPIAGNITCRSNITGLLLLR
DGGNTSDPEEIFRPGGGDMRDNWRSELYKYKVVEIKPLGVAPTKAKRRVVEREKRAVG
IGAVLLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWG
IKQLQARVLAIERYLKDQQLLGIWGCSGKLICTTSVPWNDSWSHNKSLQDIWDNMTWM
QWDKEINNYTNIIYRLLEESQSQQEKNEQDLLALDSWQNLWNWFSISKWLWYIKIFIM
IVGGLIGLRIIFAVLSIVNRARQGYSPLSFQTLTPSPRGPDRLGRIEEEGGEQDRDRS
IRLVSGFLALAWDDLRSLCLFLYHRLRDFLLVIARTVEILGRSSLRGLQRGWEALKYL
GNLVQYWGSEIKKSAISLFDTIAIAVAEGTDRIIETIQRIYRAICNIPVRIRQGFEAA
LL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AGU36073.1"
/db_xref="GI:534826576"
/translation="ESDGDIEELATMGDMGHLRLLDGVDL"
gene <2140..2387
/gene="rev"
CDS <2140..2387
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AGU36072.1"
/db_xref="GI:534826575"
/translation="PYPKPEGTRQARKNRRRRWRARQRQIHSISERILSTCLGRPAEP
VPLPLPPIERLSIGDSENGGNSGTQQSQGTTEGVGSP"
gene <2140..2230
/gene="tat"
CDS <2140..2230
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AGU36071.1"
/db_xref="GI:534826574"
/translation="PLPQARGDPTGSEESKKKVESKTETDPFD"
BASE COUNT 903 a 441 c 606 g 627 t
ORIGIN
1 atgagagtga tggggatatt gaagagttgg caaccatggg ggatatgggg catcttaggc
61 ttttggatgg tgttgacttg tagtgtacta gggaacttgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaaaactact ctattctgtg catcagatgc taaagcatat
181 gagagagaag cgcacaatgt ctgggctaca catgcctgtg tgcccacaga ccccaaccca
241 caagaactgg ttttggaaaa tgtaacagaa aactttaaca tgtggaaaaa tgacatggta
301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaag
361 ctgaccccac tctgtgtcac tttagattgt aaaaatagta ctgaaaatat tactgatagc
421 gggaatgtta tagataatgg agaaaggaaa aattgctctt ttaatataac cacagaaata
481 aaagataaga aacagaacgt gtatgcactt ttttataaac ttgatatagt accacttaat
541 gaggacaaca gttcctacta tagactaata aattgtaata cctcagccat aacacaagcc
601 tgtccaaagg tctcttttga cccaattcct atacattatt gtgcaccagc tggttatgcg
661 attctaaagt gtaataataa gacattcaat gggacaggac catgtcataa tgtcagcaca
721 gtacaatgta cacatggaat taagccagtg gtatcaactc aactactgtt aaatggtagc
781 ctagcagaag aagagataat aattagatct aaaaatctga cagacaatgc caaaataata
841 atagtacacc ttaatgagtc tgtagagatt aattgtacaa gacccggcaa caatacaaga
901 aaaagtataa ggataggacc aggacaaaca ttctatgcac caaatggaat aataggaaac
961 ataagaaaag cacattgtac cattagggaa aagcagtgga acgaaacttt aatacaggta
1021 gggaaaaaat tagcagaact cttccctaat aaaagaataa agtttaattc atcctcagga
1081 ggggatctag aaatcacaac acatagcttt acttgtggag gagaattttt ctattgcaat
1141 acatcaggat tgtttaatgg cacatacgat cctagggata ataatacaat gagtaattta
1201 agctcaagtg acaacatcac actcatactc ccatgcaaaa taaagcaaat tataaacatg
1261 tggcaggggg taggaaaagc gatatatgct cctcccattg caggaaacat aacatgtaga
1321 tcaaatatca caggactact attgctacgt gatggaggaa atacaagtga cccagaagag
1381 atattcagac ctggaggagg agatatgagg gacaattgga gaagtgaatt atataaatac
1441 aaagtggtag aaattaagcc attgggagtg gcacccacta aggcaaaaag gagagtggtg
1501 gagagagaaa aaagagcagt gggaatagga gctgtactcc ttgggttctt aggagcggca
1561 ggaagcacta tgggcgcggc gtcaataacg ctgacggtac aggccagaca actgttgtct
1621 ggtatagtgc aacagcaaag caatttgctg agggctatag aggcgcaaca gcatatgttg
1681 caactcacgg tctggggcat taagcagctc caggctagag tcctggccat agaaagatac
1741 ctaaaggatc aacagctcct aggaatttgg ggctgctctg gaaaactcat ctgcaccact
1801 tctgtgcctt ggaatgacag ttggagtcat aataaatctc tacaagatat ttgggataac
1861 atgacctgga tgcagtggga taaagaaatt aataattaca caaatataat atacaggttg
1921 cttgaggaat cacaaagcca gcaggaaaaa aatgaacaag atttattagc attggacagt
1981 tggcaaaatc tgtggaattg gttcagcata tcaaaatggc tgtggtatat aaaaatattc
2041 ataatgatag taggaggctt gataggttta aggataattt ttgctgtgct ttctatagtg
2101 aatagagcta ggcagggata ctcacctttg tcgtttcaga cccttacccc aagcccgagg
2161 ggacccgaca ggctcggaag aatcgaagaa gaaggtggag agcaagacag agacagatcc
2221 attcgattag tgagcggatt cttagcactt gcctgggacg acctgcggag cctgtgcctc
2281 ttcctctacc accgattgag agactttcta ttggtgatag cgagaacggt ggaaattctg
2341 ggacgcagca gtctcagggg actacagagg gggtgggaag cccttaaata tctgggaaac
2401 cttgtgcagt attggggttc agagataaaa aagagtgcta ttagtctatt tgataccata
2461 gccatagcag tagctgaagg aacagatagg attatagaaa caatacaaag aatttataga
2521 gctatctgca acatacctgt aagaataaga cagggctttg aagcagcttt gctataa
//
last modified: Tue May 31 10:56 2022