View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KF523485 2188 bp mRNA linear VRL 05-NOV-2013
DEFINITION Simian immunodeficiency virus isolate 1SV11_11 envelope
glycoprotein (env) mRNA, partial cds
ACCESSION KF523485
VERSION KF523485.1 GI:555684955
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2188)
Show all sequences for reference 1
AUTHORS Fieni,F., Stone,M., Ma,Z.M., Dutra,J., Fritts,L. and Miller,C.J.
TITLE Viral RNA Levels and env Variants in Semen and Tissues of Mature
Male Rhesus Macaques Infected with SIV by Penile Inoculation
JOURNAL PLoS ONE 8 (10), E76367 (2013)
PUBMED 24146859
REFERENCE 2 (bases 1 to 2188)
Show all sequences for reference 2
AUTHORS Fieni,F., Miller,C.J., Stone,M., Ma,Z.M., Dutra,J.C. and Fritts,L.
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2013) Department of Pathology, Microbiology and
Immunology, Division of Infectious Diseases, Department of Internal
Medicine, Center for Comparative Medicine and California National
Primate Research Center, University of California, Davis, One
Shields Avenue, Davis, CA 95616, USA
COMMENT ##Assembly-Data-START## Assembly Method ABI 3730xl DNA analyzer v.
latest Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2188
/organism="Simian immunodeficiency virus"
/mol_type="mRNA"
/strain="SIVmac251"
/isolate="1SV11_11"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="2011"
gene <1..>2188
/gene="env"
CDS <1..>2188
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGZ16597.1"
/db_xref="GI:555684956"
/translation="ESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKS
ETDKWGLTKSSTTTTATTATPASTTRTTSAKIDMVNETSSCITHNNCTGLEQEQMISC
KFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWD
TIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAEN
RTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPITIMSGLVFHSQPINDRPKQA
WCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFL
YCKMNWFLNWVEDRNLTLTTQELRERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGD
LTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKR
YTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVV
KRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTP
DWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWI
RYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQIHTQQDPALPTR
EGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSR"
BASE COUNT 732 a 403 c 513 g 540 t
ORIGIN
1 gaaagctttg atgcttggga gaatacagtc acagaacagg caatagagga tgtatggcaa
61 ctctttgaga cctcaataaa gccttgtgta aaattatccc cattatgcat tactatgaga
121 tgcaataaaa gtgagacaga taaatgggga ttaacaaaat catcaacaac aacaacagca
181 acaacagcaa caccagcatc aacaacaagg acaacatcag caaaaataga catggtcaat
241 gagactagtt cttgtataac tcataataat tgcacaggct tggaacaaga gcaaatgata
301 agctgtaagt tcaacatgac agggttaaaa agagacaaga aaaaggagta caatgaaact
361 tggtactcta cagatttggt ttgtgaacaa gggaatagca ctgataatga aagtagatgc
421 tacatgaatc actgtaacac ttctgttatc caagagtctt gtgacaagca ttattgggat
481 actattagat ttaggtattg tgcacctcca ggttatgctt tgcttagatg taatgacaca
541 aattattcag gctttatgcc taaatgttct aaggtggtgg tctcttcatg cacaaggatg
601 atggagacac agacttctac ttggtttggc tttaatggaa ctagagcaga aaatagaact
661 tatatttact ggcatggtag agataatagg actataatta gtttaaataa gtattataat
721 ctaacaatga aatgtagaag accaggaaat aagacagttt taccaatcac cattatgtct
781 ggattggttt tccactcaca accaatcaat gataggccaa agcaggcatg gtgttggttt
841 ggaggaaatt ggaaggatgc aataaaagag gtgaagcaga ccattgtcaa acatcccagg
901 tatactggaa ctaacaatac tgataagatc aatttgacgg ctcctagagg aggagatccg
961 gaagttacct tcatgtggac aaattgcaga ggagagtttc tctactgtaa aatgaattgg
1021 tttctaaatt gggtagaaga taggaatcta actctaacta cccaggagct aagggaacgg
1081 cataaaagga attacgtgcc atgtcatatt agacaaataa tcaacacttg gcataaagta
1141 ggcaaaaatg tttatttgcc tccaagagag ggagacctca cgtgtaactc cacagtgacc
1201 agtctcatag caaacataga ttggactgat ggaaatcaaa ctaatatcac catgagtgca
1261 gaggtggcag aactgtatcg attggaattg ggagattata aattagtaga gatcactcca
1321 attggcttgg cccccacaga tgtgaagagg tacactactg gtggcacctc aagaaataaa
1381 agaggggtct ttgtgctagg gttcttgggt tttctcgcaa cggcaggttc tgcaatgggc
1441 gcggcgtcgt tgacgctgac cgctcagtcc cggactttat tggctgggat agtgcagcaa
1501 cagcaacagc tgttggacgt ggtcaagaga caacaagaat tgttgcgact gaccgtctgg
1561 ggaacaaaga acctccagac tagggtcact gccatcgaga agtacttaaa ggaccaggcg
1621 cagctgaatg cttggggatg tgcgtttaga caagtctgcc acactactgt accatggcca
1681 aatgcaagtc taacaccaga ctggaacaat gatacttggc aagagtggga gcgaaaggtt
1741 gacttcttgg aggaaaatat aacagccctc ctagaagagg cacaaattca acaagagaag
1801 aacatgtatg aattacaaaa gttgaatagc tgggatgtgt ttggcaattg gtttgacctt
1861 gcttcttgga taaggtatat acaatatgga atttatatag ttgtaggagt aatactgtta
1921 agaatagtga tctacatagt acaaatgcta gctaagttaa ggcaggggta taggccagtg
1981 ttctcttccc caccctctta ttcccagcag atccataccc aacaggaccc ggcactgcca
2041 accagagaag gcaaagaagg agacggtgga gaaggcggtg gcaacagctc ctggccttgg
2101 cagatagaat atattcattt cctgatccgc caactgatac gcctcttgac ttggctattc
2161 agcaactgca gaaccttgct atcgagag
//
last modified: Tue May 31 10:56 2022