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LOCUS	    KF523470		    2188 bp   mRNA     linear	VRL 05-NOV-2013
DEFINITION  Simian immunodeficiency virus isolate 1PR11_17 envelope
	    glycoprotein (env) mRNA, partial cds
ACCESSION   KF523470
VERSION     KF523470.1 GI:555684925
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2188)
            Show all sequences for reference 1
  AUTHORS   Fieni,F., Stone,M., Ma,Z.M., Dutra,J., Fritts,L. and Miller,C.J.
  TITLE     Viral RNA Levels and env Variants in Semen and Tissues of Mature
	    Male Rhesus Macaques Infected with SIV by Penile Inoculation
  JOURNAL   PLoS ONE 8 (10), E76367 (2013)
  PUBMED    24146859
REFERENCE   2 (bases 1 to 2188)
            Show all sequences for reference 2
  AUTHORS   Fieni,F., Miller,C.J., Stone,M., Ma,Z.M., Dutra,J.C. and Fritts,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2013) Department of Pathology, Microbiology and
	    Immunology, Division of Infectious Diseases, Department of Internal
	    Medicine, Center for Comparative Medicine and California National
	    Primate Research Center, University of California, Davis, One
	    Shields Avenue, Davis, CA 95616, USA
COMMENT     ##Assembly-Data-START## Assembly Method ABI 3730xl DNA analyzer v.
	    latest Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2188
		     /organism="Simian immunodeficiency virus"
		     /mol_type="mRNA"
		     /strain="SIVmac251"
		     /isolate="1PR11_17"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="2011"
     gene	     <1..>2188
		     /gene="env"
     CDS	     <1..>2188
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGZ16582.1"
		     /db_xref="GI:555684926"
		     /translation="ESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKS
		     ETDKWGLTKSSTTTTATTATPASTTRTTSAKIDMVNETSSCITHNNCTGLEQEQMISC
		     KFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQEACDKHYWD
		     TIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAEN
		     RTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQA
		     WCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFL
		     YCKMNWFLNWVEDRNLTLTTQKLGERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGD
		     LTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKR
		     YTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVV
		     KRQQELLRLTIWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTP
		     DWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWI
		     RYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQIHTQQDPALPTR
		     EGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSR"
BASE COUNT	733 a	 402 c	  513 g    540 t
ORIGIN
       1 gaaagctttg atgcttggga gaatacagtc acagaacagg caatagagga tgtatggcaa 
      61 ctctttgaga cctcaataaa gccttgtgta aaattatccc cattatgcat tactatgaga 
     121 tgcaataaaa gtgagacaga taaatgggga ttaacaaaat catcaacaac aacaacagca 
     181 acaacagcaa caccagcatc aacaacaagg acaacatcag caaaaataga catggtcaat 
     241 gagactagtt cttgtataac tcataataat tgcacaggct tggaacaaga gcaaatgata 
     301 agctgtaagt tcaacatgac agggttaaaa agagacaaga aaaaggagta caatgaaact 
     361 tggtactcta cagatttggt ttgtgaacaa gggaatagca ctgataatga aagtagatgc 
     421 tacatgaatc actgtaacac ttctgttatc caagaggctt gtgacaagca ttattgggat 
     481 actattagat ttaggtattg tgcacctcca ggttatgctt tgcttagatg taatgacaca 
     541 aattattcag gctttatgcc taaatgttct aaggtggtgg tctcttcatg cacaaggatg 
     601 atggagacac agacttctac ttggtttggc tttaatggaa ctagagcaga aaatagaact 
     661 tatatttact ggcatggtag agataatagg actataatta gtttaaataa gtattataat 
     721 ctaacaatga aatgtagaag accaggaaat aagacagttt taccagtcac cattatgtct 
     781 ggattggttt tccactcaca accaatcaat gataggccaa agcaggcatg gtgttggttt 
     841 ggaggaaatt ggaaggatgc aataaaagag gtgaagcaga ccattgtcaa acatcccagg 
     901 tatactggaa ctaacaatac tgataagatc aatttgacgg ctcctagagg aggagatccg 
     961 gaagttacct tcatgtggac aaattgcaga ggagagtttc tctactgtaa aatgaattgg 
    1021 tttctaaatt gggtagaaga taggaatcta actctaacta cccagaagct aggggaacga 
    1081 cataaaagga attacgtgcc atgtcatatt agacaaataa tcaacacttg gcataaagta 
    1141 ggcaaaaatg tttatttgcc tccaagagag ggagacctca cgtgtaactc cacagtgacc 
    1201 agtctcatag caaacataga ttggactgat ggaaatcaaa ctaatatcac catgagtgca 
    1261 gaggtggcag aactgtatcg attggaattg ggagattata aattagtaga gatcactcca 
    1321 attggcttgg cccccacaga tgtgaagagg tacactactg gtggcacctc aagaaataaa 
    1381 agaggggtct ttgtgctagg gttcttgggt tttctcgcaa cggcaggttc tgcaatgggc 
    1441 gcggcgtcgt tgacgctgac cgctcagtcc cggactttat tggctgggat agtgcagcaa 
    1501 cagcaacagc tgttggacgt ggtcaagaga caacaagaat tgttgcgact gaccatctgg 
    1561 ggaacaaaga acctccagac tagggtcact gccatcgaga agtacttaaa ggaccaggcg 
    1621 cagctgaatg cttggggatg tgcgtttaga caagtctgcc acactactgt accatggcca 
    1681 aatgcaagtc taacaccaga ctggaacaat gatacttggc aagagtggga gcgaaaggtt 
    1741 gacttcttgg aggaaaatat aacagccctc ctagaagagg cacaaattca acaagagaag 
    1801 aacatgtatg aattacaaaa gttgaatagc tgggatgtgt ttggcaattg gtttgacctt 
    1861 gcttcttgga taaggtatat acaatatgga atttatatag ttgtaggagt aatactgtta 
    1921 agaatagtga tctatatagt acaaatgcta gctaagttaa ggcaggggta taggccagtg 
    1981 ttctcttccc caccctctta ttcccagcag atccataccc aacaggaccc ggcactgcca 
    2041 accagagaag gcaaagaagg agacggtgga gaaggcggtg gcaacagctc ctggccttgg 
    2101 cagatagaat atattcattt cctgatccgc caactgatac gcctcttgac ttggctattc 
    2161 agcaactgca gaaccttgct atcgagag
//
last modified: Tue May 31 10:56 2022


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