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LOCUS	    KF523452		    2173 bp   mRNA     linear	VRL 05-NOV-2013
DEFINITION  Simian immunodeficiency virus isolate 1LN11_03 envelope
	    glycoprotein (env) mRNA, partial cds
ACCESSION   KF523452
VERSION     KF523452.1 GI:555684889
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2173)
            Show all sequences for reference 1
  AUTHORS   Fieni,F., Stone,M., Ma,Z.M., Dutra,J., Fritts,L. and Miller,C.J.
  TITLE     Viral RNA Levels and env Variants in Semen and Tissues of Mature
	    Male Rhesus Macaques Infected with SIV by Penile Inoculation
  JOURNAL   PLoS ONE 8 (10), E76367 (2013)
  PUBMED    24146859
REFERENCE   2 (bases 1 to 2173)
            Show all sequences for reference 2
  AUTHORS   Fieni,F., Miller,C.J., Stone,M., Ma,Z.M., Dutra,J.C. and Fritts,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2013) Department of Pathology, Microbiology and
	    Immunology, Division of Infectious Diseases, Department of Internal
	    Medicine, Center for Comparative Medicine and California National
	    Primate Research Center, University of California, Davis, One
	    Shields Avenue, Davis, CA 95616, USA
COMMENT     ##Assembly-Data-START## Assembly Method ABI 3730xl DNA analyzer v.
	    latest Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2173
		     /organism="Simian immunodeficiency virus"
		     /mol_type="mRNA"
		     /strain="SIVmac251"
		     /isolate="1LN11_03"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="2011"
     gene	     <1..>2173
		     /gene="env"
     CDS	     <1..>2173
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGZ16564.1"
		     /db_xref="GI:555684890"
		     /translation="ESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKS
		     ETDKWGLTKSSTTTTATIATPASTTRTTSAKIDMVNETSSCITHNNCTGLEQEQMISC
		     KFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWD
		     TIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAEN
		     RTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQA
		     WCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFL
		     YCKMNWFLNWVEDRNLTLRERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNS
		     TVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGG
		     TSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQE
		     LLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPDWNND
		     TWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIRYIQY
		     GIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQIHTQQDLALPTREGKEG
		     DGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSR"
BASE COUNT	726 a	 396 c	  511 g    540 t
ORIGIN
       1 gaaagctttg atgcttggga gaatacagtc acagaacagg caatagagga tgtatggcaa 
      61 ctctttgaga cctcaataaa gccttgtgta aaattatccc cattatgcat tactatgaga 
     121 tgcaataaaa gtgagacaga caaatgggga ttaacaaaat catcaacaac aacaacagca 
     181 acaatagcaa caccagcatc aacaacaagg acaacatcag caaaaataga catggtcaat 
     241 gagactagtt cttgtataac tcataataat tgcacaggct tggaacaaga gcaaatgata 
     301 agctgtaagt tcaacatgac agggttaaaa agagacaaga aaaaggagta caatgaaact 
     361 tggtactcta cagatttggt ttgtgaacaa gggaatagca ctgataatga aagtagatgc 
     421 tacatgaatc actgtaacac ttctgttatc caagagtctt gtgacaagca ttattgggat 
     481 actattagat ttaggtattg tgcacctcca ggttatgctt tgcttagatg taatgacaca 
     541 aattattcag gctttatgcc taaatgttct aaggtggtgg tctcttcatg cacaaggatg 
     601 atggagacac agacttctac ttggtttggc tttaatggaa ctagagcaga aaatagaact 
     661 tatatttact ggcatggtag agataatagg actataatta gtttaaataa gtattataat 
     721 ctaacaatga aatgtagaag accaggaaat aagacagttt taccagtcac cattatgtct 
     781 ggattggttt tccactcaca accaatcaat gataggccaa agcaggcatg gtgttggttt 
     841 ggaggaaatt ggaaggatgc aataaaagag gtgaagcaga ccattgtcaa acatcccagg 
     901 tatactggaa ctaacaatac tgataagatc aatttgacgg ctcctagagg aggagatccg 
     961 gaagttacct tcatgtggac aaattgcaga ggagagtttc tctactgtaa aatgaattgg 
    1021 tttctaaatt gggtagaaga taggaatcta actctaaggg aacggcataa aaggaattac 
    1081 gtgccatgtc atattagaca aataatcaac acttggcata aagtaggcaa aaatgtttat 
    1141 ttgcctccaa gagagggaga cctcacgtgt aactccacag tgaccagtct catagcaaac 
    1201 atagattgga ctgatggaaa tcaaactaat atcaccatga gtgcagaggt ggcagaactg 
    1261 tatcgattgg aattgggaga ttataaatta gtagagatca ctccaattgg cttggccccc 
    1321 acagatgtga agaggtacac tactggtggc acctcaagaa ataaaagagg ggtctttgtg 
    1381 ctagggttct tgggttttct cgcaacggca ggttctgcaa tgggcgcggc gtcgttgacg 
    1441 ctgaccgctc agtcccggac tttattggct gggatagtgc agcaacagca acagctgttg 
    1501 gacgtggtca agagacaaca agaattgttg cgactgaccg tctggggaac aaagaacctc 
    1561 cagactaggg tcactgccat cgagaagtac ttaaaggacc aggcgcagct gaatgcttgg 
    1621 ggatgtgcgt ttagacaagt ctgccacact actgtaccat ggccaaatgc aagtctaaca 
    1681 ccagactgga acaatgatac ttggcaagag tgggagcgaa aggttgactt cttggaggaa 
    1741 aatataacag ccctcctaga agaggcacaa attcaacaag agaagaacat gtatgaatta 
    1801 caaaagttga atagctggga tgtgtttggc aattggtttg accttgcttc ttggataagg 
    1861 tatatacaat atggaattta tatagttgta ggagtaatac tgttaagaat agtgatctat 
    1921 atagtacaaa tgctagctaa gttaaggcag gggtataggc cagtgttctc ttccccaccc 
    1981 tcttattccc agcagatcca tacccaacag gacctggcac tgccaaccag agaaggcaaa 
    2041 gaaggagacg gtggagaagg cggtggcaac agctcctggc cttggcagat agaatatatt 
    2101 catttcctga tccgccaact gatacgcctc ttgacttggc tattcagcaa ctgcagaacc 
    2161 ttgctatcga gag
//
last modified: Tue May 31 10:56 2022


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