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LOCUS KF523452 2173 bp mRNA linear VRL 05-NOV-2013
DEFINITION Simian immunodeficiency virus isolate 1LN11_03 envelope
glycoprotein (env) mRNA, partial cds
ACCESSION KF523452
VERSION KF523452.1 GI:555684889
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2173)
Show all sequences for reference 1
AUTHORS Fieni,F., Stone,M., Ma,Z.M., Dutra,J., Fritts,L. and Miller,C.J.
TITLE Viral RNA Levels and env Variants in Semen and Tissues of Mature
Male Rhesus Macaques Infected with SIV by Penile Inoculation
JOURNAL PLoS ONE 8 (10), E76367 (2013)
PUBMED 24146859
REFERENCE 2 (bases 1 to 2173)
Show all sequences for reference 2
AUTHORS Fieni,F., Miller,C.J., Stone,M., Ma,Z.M., Dutra,J.C. and Fritts,L.
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2013) Department of Pathology, Microbiology and
Immunology, Division of Infectious Diseases, Department of Internal
Medicine, Center for Comparative Medicine and California National
Primate Research Center, University of California, Davis, One
Shields Avenue, Davis, CA 95616, USA
COMMENT ##Assembly-Data-START## Assembly Method ABI 3730xl DNA analyzer v.
latest Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2173
/organism="Simian immunodeficiency virus"
/mol_type="mRNA"
/strain="SIVmac251"
/isolate="1LN11_03"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="2011"
gene <1..>2173
/gene="env"
CDS <1..>2173
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGZ16564.1"
/db_xref="GI:555684890"
/translation="ESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKS
ETDKWGLTKSSTTTTATIATPASTTRTTSAKIDMVNETSSCITHNNCTGLEQEQMISC
KFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWD
TIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAEN
RTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQA
WCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFL
YCKMNWFLNWVEDRNLTLRERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNS
TVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGG
TSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQE
LLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPDWNND
TWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIRYIQY
GIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQIHTQQDLALPTREGKEG
DGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSR"
BASE COUNT 726 a 396 c 511 g 540 t
ORIGIN
1 gaaagctttg atgcttggga gaatacagtc acagaacagg caatagagga tgtatggcaa
61 ctctttgaga cctcaataaa gccttgtgta aaattatccc cattatgcat tactatgaga
121 tgcaataaaa gtgagacaga caaatgggga ttaacaaaat catcaacaac aacaacagca
181 acaatagcaa caccagcatc aacaacaagg acaacatcag caaaaataga catggtcaat
241 gagactagtt cttgtataac tcataataat tgcacaggct tggaacaaga gcaaatgata
301 agctgtaagt tcaacatgac agggttaaaa agagacaaga aaaaggagta caatgaaact
361 tggtactcta cagatttggt ttgtgaacaa gggaatagca ctgataatga aagtagatgc
421 tacatgaatc actgtaacac ttctgttatc caagagtctt gtgacaagca ttattgggat
481 actattagat ttaggtattg tgcacctcca ggttatgctt tgcttagatg taatgacaca
541 aattattcag gctttatgcc taaatgttct aaggtggtgg tctcttcatg cacaaggatg
601 atggagacac agacttctac ttggtttggc tttaatggaa ctagagcaga aaatagaact
661 tatatttact ggcatggtag agataatagg actataatta gtttaaataa gtattataat
721 ctaacaatga aatgtagaag accaggaaat aagacagttt taccagtcac cattatgtct
781 ggattggttt tccactcaca accaatcaat gataggccaa agcaggcatg gtgttggttt
841 ggaggaaatt ggaaggatgc aataaaagag gtgaagcaga ccattgtcaa acatcccagg
901 tatactggaa ctaacaatac tgataagatc aatttgacgg ctcctagagg aggagatccg
961 gaagttacct tcatgtggac aaattgcaga ggagagtttc tctactgtaa aatgaattgg
1021 tttctaaatt gggtagaaga taggaatcta actctaaggg aacggcataa aaggaattac
1081 gtgccatgtc atattagaca aataatcaac acttggcata aagtaggcaa aaatgtttat
1141 ttgcctccaa gagagggaga cctcacgtgt aactccacag tgaccagtct catagcaaac
1201 atagattgga ctgatggaaa tcaaactaat atcaccatga gtgcagaggt ggcagaactg
1261 tatcgattgg aattgggaga ttataaatta gtagagatca ctccaattgg cttggccccc
1321 acagatgtga agaggtacac tactggtggc acctcaagaa ataaaagagg ggtctttgtg
1381 ctagggttct tgggttttct cgcaacggca ggttctgcaa tgggcgcggc gtcgttgacg
1441 ctgaccgctc agtcccggac tttattggct gggatagtgc agcaacagca acagctgttg
1501 gacgtggtca agagacaaca agaattgttg cgactgaccg tctggggaac aaagaacctc
1561 cagactaggg tcactgccat cgagaagtac ttaaaggacc aggcgcagct gaatgcttgg
1621 ggatgtgcgt ttagacaagt ctgccacact actgtaccat ggccaaatgc aagtctaaca
1681 ccagactgga acaatgatac ttggcaagag tgggagcgaa aggttgactt cttggaggaa
1741 aatataacag ccctcctaga agaggcacaa attcaacaag agaagaacat gtatgaatta
1801 caaaagttga atagctggga tgtgtttggc aattggtttg accttgcttc ttggataagg
1861 tatatacaat atggaattta tatagttgta ggagtaatac tgttaagaat agtgatctat
1921 atagtacaaa tgctagctaa gttaaggcag gggtataggc cagtgttctc ttccccaccc
1981 tcttattccc agcagatcca tacccaacag gacctggcac tgccaaccag agaaggcaaa
2041 gaaggagacg gtggagaagg cggtggcaac agctcctggc cttggcagat agaatatatt
2101 catttcctga tccgccaact gatacgcctc ttgacttggc tattcagcaa ctgcagaacc
2161 ttgctatcga gag
//
last modified: Tue May 31 10:56 2022