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LOCUS	    KF292386		     630 bp    RNA     linear	VRL 23-OCT-2013
DEFINITION  HIV-1 isolate Q0505086 from Cambodia reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   KF292386
VERSION     KF292386.1 GI:550076507
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Increased Risk of Q151M and K65R Mutations in Patients Failing
	    Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
  JOURNAL   PLoS ONE 8 (8), E73744 (2013)
  PUBMED    24015311
REFERENCE   2 (bases 1 to 630)
            Show all sequences for reference 2
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
	    Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Q0505086"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="05-May-2006"
		     /note="genotype: CRF01_AE"
     gene	     <1..>630
		     /gene="pol"
     CDS	     <1..>630
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AGX83887.1"
		     /db_xref="GI:550076508"
		     /translation="KIKALTEICEEMEKEGKISKIGPENPYNTPVFAIKKKDSTXWRK
		     LVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTILDVGDAYFSVPLDENFRKYTAFT
		     IPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEMVICQYVDDLYV
		     GSDLEIGQHRTKIEELREHLLRWGFFTPDKKHQKEPPFRWMGYELHPDRW"
BASE COUNT	254 a	 101 c	  130 g    143 t      2 other
ORIGIN
       1 aaaataaaag cattaacaga aatttgtgaa gagatggaaa aggaaggaaa aatttcaaaa 
      61 attgggcctg aaaayccata caatactcca gtatttgcta taaagaaaaa ggacagcacc 
     121 aratggagga aattagtaga tttcagagaa ctcaataaaa gaactcagga tttttgggaa 
     181 gttcaattag gaataccgca tccagcaggg ttaaaaaaga aaaaatcagt aacaatacta 
     241 gatgtgggag atgcatattt ttcagtccct ttagatgaaa actttagaaa gtatactgca 
     301 ttcaccatac ctagtacaaa caatgagaca ccaggaatca gatatcaata caatgtgctg 
     361 ccacaagggt ggaaaggatc accagcaata ttccagagta gcatgacaaa aatcttagag 
     421 ccctttagaa taaaaaatcc agaaatggtt atctgtcaat acgtggatga cttatatgta 
     481 ggatctgact tagaaatagg gcagcacaga acaaaaatag aggagctaag agagcatcta 
     541 ttgagatggg gattttttac accagacaag aagcatcaga aagaacctcc attccgttgg 
     601 atgggatatg aactccatcc tgacagatgg 
//
last modified: Tue May 31 10:56 2022


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