View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KF292386 630 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate Q0505086 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292386
VERSION KF292386.1 GI:550076507
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 630)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Q0505086"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="05-May-2006"
/note="genotype: CRF01_AE"
gene <1..>630
/gene="pol"
CDS <1..>630
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83887.1"
/db_xref="GI:550076508"
/translation="KIKALTEICEEMEKEGKISKIGPENPYNTPVFAIKKKDSTXWRK
LVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTILDVGDAYFSVPLDENFRKYTAFT
IPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEMVICQYVDDLYV
GSDLEIGQHRTKIEELREHLLRWGFFTPDKKHQKEPPFRWMGYELHPDRW"
BASE COUNT 254 a 101 c 130 g 143 t 2 other
ORIGIN
1 aaaataaaag cattaacaga aatttgtgaa gagatggaaa aggaaggaaa aatttcaaaa
61 attgggcctg aaaayccata caatactcca gtatttgcta taaagaaaaa ggacagcacc
121 aratggagga aattagtaga tttcagagaa ctcaataaaa gaactcagga tttttgggaa
181 gttcaattag gaataccgca tccagcaggg ttaaaaaaga aaaaatcagt aacaatacta
241 gatgtgggag atgcatattt ttcagtccct ttagatgaaa actttagaaa gtatactgca
301 ttcaccatac ctagtacaaa caatgagaca ccaggaatca gatatcaata caatgtgctg
361 ccacaagggt ggaaaggatc accagcaata ttccagagta gcatgacaaa aatcttagag
421 ccctttagaa taaaaaatcc agaaatggtt atctgtcaat acgtggatga cttatatgta
481 ggatctgact tagaaatagg gcagcacaga acaaaaatag aggagctaag agagcatcta
541 ttgagatggg gattttttac accagacaag aagcatcaga aagaacctcc attccgttgg
601 atgggatatg aactccatcc tgacagatgg
//
last modified: Tue May 31 10:56 2022