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LOCUS KF292379 672 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate Q0421076 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292379
VERSION KF292379.1 GI:550076493
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Q0421076"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="21-Apr-2006"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83880.1"
/db_xref="GI:550076494"
/translation="MDGPKVKQWPLTKEKIKALTEICNEMEKEGKISKIGPENPYNTP
VFAIKKKBSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSVTVLDVGDAYFS
VPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKN
PEMIIYQYVDDLYVASDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYE
LHPDKW"
BASE COUNT 268 a 110 c 136 g 155 t 3 other
ORIGIN
1 atggatgggc caaaggttaa acagtggcca ttgacaaaag aaaaaataaa agcattaaca
61 gaaatttgta atgagatgga aaaggaagga aaaatctcaa aaattgggcc tgaaaatcca
121 tacaatactc cagtatttgc tataaagaaa aarracagca ccaaatggag gaaattagtg
181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaatacct
241 catccagcag gcttagaaaa gaaaaaatca gtaacagtac tagatgtggg agatgcatat
301 ttttcagttc ctttagatga aaattttaga aagtatactg cattcaccat acctagtata
361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga
421 tcaccagcaa tattccagag tagcatgaca aaaatcttag agccttttag aatcaaaaat
481 ccagaaatga ttatctatca atacgtggat gacttgtatg tagcatctga tttagaaata
541 gggcagcaca gaacaaaaat agaggaacta agagctcatc tattgagctg gggatttacy
601 acaccagaca aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat
661 cctgacaaat gg
//
last modified: Tue May 31 10:56 2022