HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KF292379		     672 bp    RNA     linear	VRL 23-OCT-2013
DEFINITION  HIV-1 isolate Q0421076 from Cambodia reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   KF292379
VERSION     KF292379.1 GI:550076493
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Increased Risk of Q151M and K65R Mutations in Patients Failing
	    Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
  JOURNAL   PLoS ONE 8 (8), E73744 (2013)
  PUBMED    24015311
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
	    Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Q0421076"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="21-Apr-2006"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AGX83880.1"
		     /db_xref="GI:550076494"
		     /translation="MDGPKVKQWPLTKEKIKALTEICNEMEKEGKISKIGPENPYNTP
		     VFAIKKKBSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSVTVLDVGDAYFS
		     VPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKN
		     PEMIIYQYVDDLYVASDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYE
		     LHPDKW"
BASE COUNT	268 a	 110 c	  136 g    155 t      3 other
ORIGIN
       1 atggatgggc caaaggttaa acagtggcca ttgacaaaag aaaaaataaa agcattaaca 
      61 gaaatttgta atgagatgga aaaggaagga aaaatctcaa aaattgggcc tgaaaatcca 
     121 tacaatactc cagtatttgc tataaagaaa aarracagca ccaaatggag gaaattagtg 
     181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaatacct 
     241 catccagcag gcttagaaaa gaaaaaatca gtaacagtac tagatgtggg agatgcatat 
     301 ttttcagttc ctttagatga aaattttaga aagtatactg cattcaccat acctagtata 
     361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga 
     421 tcaccagcaa tattccagag tagcatgaca aaaatcttag agccttttag aatcaaaaat 
     481 ccagaaatga ttatctatca atacgtggat gacttgtatg tagcatctga tttagaaata 
     541 gggcagcaca gaacaaaaat agaggaacta agagctcatc tattgagctg gggatttacy 
     601 acaccagaca aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat 
     661 cctgacaaat gg
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health