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LOCUS KF292378 672 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate Q0421074 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292378
VERSION KF292378.1 GI:550076491
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Q0421074"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="21-Apr-2006"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83879.1"
/db_xref="GI:550076492"
/translation="XDGPKVKQWPLTEEKIKALREICAEMEKEGQISKIGPENPYNTP
VFAIKKKBSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSITVLDVGDAYFS
VPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRLKN
PEIVIYQYVDDLYVASDLEIGQHRTKIEELRDHLLKWGFTTPDKKHQKEPPFLWMGYE
LHPDRW"
BASE COUNT 269 a 112 c 138 g 151 t 2 other
ORIGIN
1 akggatggac caaaagttaa acagtggcca ttgacagaag agaaaataaa agcattaaga
61 gaaatttgtg cagagatgga aaaggaagga caaatctcaa aaattgggcc tgaaaatcca
121 tacaatactc cagtatttgc tatcaagaaa aagracagca ccaaatggag gaaattagta
181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaatacca
241 catccagcag gcttagaaaa gaagaaatca ataacagtac tggatgtagg agatgcatat
301 ttttcagttc ctttagatga aaactttaga aagtatactg cattcaccat acctagtata
361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga
421 tcaccagcaa tatttcagag cagcatgaca aaaatcttag agccctttag actaaaaaat
481 ccagaaatag ttatctatca atacgtggat gacttgtatg tagcatctga tttagaaata
541 gggcagcaca gaacaaaaat agaggaacta agagatcatc tgttaaaatg gggatttact
601 acaccagaca aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat
661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022