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LOCUS	    KF292378		     672 bp    RNA     linear	VRL 23-OCT-2013
DEFINITION  HIV-1 isolate Q0421074 from Cambodia reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   KF292378
VERSION     KF292378.1 GI:550076491
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Increased Risk of Q151M and K65R Mutations in Patients Failing
	    Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
  JOURNAL   PLoS ONE 8 (8), E73744 (2013)
  PUBMED    24015311
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
	    Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Q0421074"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="21-Apr-2006"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AGX83879.1"
		     /db_xref="GI:550076492"
		     /translation="XDGPKVKQWPLTEEKIKALREICAEMEKEGQISKIGPENPYNTP
		     VFAIKKKBSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSITVLDVGDAYFS
		     VPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRLKN
		     PEIVIYQYVDDLYVASDLEIGQHRTKIEELRDHLLKWGFTTPDKKHQKEPPFLWMGYE
		     LHPDRW"
BASE COUNT	269 a	 112 c	  138 g    151 t      2 other
ORIGIN
       1 akggatggac caaaagttaa acagtggcca ttgacagaag agaaaataaa agcattaaga 
      61 gaaatttgtg cagagatgga aaaggaagga caaatctcaa aaattgggcc tgaaaatcca 
     121 tacaatactc cagtatttgc tatcaagaaa aagracagca ccaaatggag gaaattagta 
     181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaatacca 
     241 catccagcag gcttagaaaa gaagaaatca ataacagtac tggatgtagg agatgcatat 
     301 ttttcagttc ctttagatga aaactttaga aagtatactg cattcaccat acctagtata 
     361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga 
     421 tcaccagcaa tatttcagag cagcatgaca aaaatcttag agccctttag actaaaaaat 
     481 ccagaaatag ttatctatca atacgtggat gacttgtatg tagcatctga tttagaaata 
     541 gggcagcaca gaacaaaaat agaggaacta agagatcatc tgttaaaatg gggatttact 
     601 acaccagaca aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat 
     661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022


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