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LOCUS	    KF292330		     672 bp    RNA     linear	VRL 23-OCT-2013
DEFINITION  HIV-1 isolate 03-0011 from Cambodia reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   KF292330
VERSION     KF292330.1 GI:550076395
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Increased Risk of Q151M and K65R Mutations in Patients Failing
	    Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
  JOURNAL   PLoS ONE 8 (8), E73744 (2013)
  PUBMED    24015311
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
	    Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="03-0011"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="18-Mar-2003"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AGX83831.1"
		     /db_xref="GI:550076396"
		     /translation="MDGPKVKQWPLTEEKIKALTEICEEMEKEGKISKIGPENPYNTP
		     VFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPGGLKKNKSVTVLDVGDAYFS
		     VPLDESFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSAMTKILEPFRRKN
		     PEIVIXQYVDDLYVGSDLEIGQHRTKIEELRGHLLSWGFFTPDQKHQKEPPFLWMGYE
		     LHPDRW"
BASE COUNT	262 a	 107 c	  146 g    156 t      1 other
ORIGIN
       1 atggatggac caaaggttaa acagtggcca ctgacagaag aaaaaataaa agcattaaca 
      61 gaaatttgtg aagagatgga aaaggaagga aaaatctcga aaattgggcc tgaaaatcca 
     121 tacaatactc cagtatttgc tataaagaaa aagaacagta ccagatggag aaaattagtg 
     181 gatttcagag agctcaataa aagaactcag gatttttggg aagttcaatt aggaataccg 
     241 catccaggag gtttaaaaaa gaacaaatca gtaacagtac tagatgtggg agatgcatat 
     301 ttctcagttc ctttagatga gagctttaga aagtatactg catttaccat acctagtgta 
     361 aacaatgaga caccaggaat cagatatcag tacaatgtac tgccacaggg atggaaagga 
     421 tcaccagcaa tattccaaag tgccatgaca aaaattttag agccctttag aagaaaaaat 
     481 ccagaaatag ttatctrtca atacgtggat gacttgtatg taggatctga tttagaaata 
     541 gggcagcaca gaacaaaaat agaggagcta agaggtcatc tattgagctg gggatttttt 
     601 acaccagacc aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat 
     661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022


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