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LOCUS KF292330 672 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate 03-0011 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292330
VERSION KF292330.1 GI:550076395
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="03-0011"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="18-Mar-2003"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83831.1"
/db_xref="GI:550076396"
/translation="MDGPKVKQWPLTEEKIKALTEICEEMEKEGKISKIGPENPYNTP
VFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPGGLKKNKSVTVLDVGDAYFS
VPLDESFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSAMTKILEPFRRKN
PEIVIXQYVDDLYVGSDLEIGQHRTKIEELRGHLLSWGFFTPDQKHQKEPPFLWMGYE
LHPDRW"
BASE COUNT 262 a 107 c 146 g 156 t 1 other
ORIGIN
1 atggatggac caaaggttaa acagtggcca ctgacagaag aaaaaataaa agcattaaca
61 gaaatttgtg aagagatgga aaaggaagga aaaatctcga aaattgggcc tgaaaatcca
121 tacaatactc cagtatttgc tataaagaaa aagaacagta ccagatggag aaaattagtg
181 gatttcagag agctcaataa aagaactcag gatttttggg aagttcaatt aggaataccg
241 catccaggag gtttaaaaaa gaacaaatca gtaacagtac tagatgtggg agatgcatat
301 ttctcagttc ctttagatga gagctttaga aagtatactg catttaccat acctagtgta
361 aacaatgaga caccaggaat cagatatcag tacaatgtac tgccacaggg atggaaagga
421 tcaccagcaa tattccaaag tgccatgaca aaaattttag agccctttag aagaaaaaat
481 ccagaaatag ttatctrtca atacgtggat gacttgtatg taggatctga tttagaaata
541 gggcagcaca gaacaaaaat agaggagcta agaggtcatc tattgagctg gggatttttt
601 acaccagacc aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat
661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022