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LOCUS KF292325 669 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate 03-0378 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292325
VERSION KF292325.1 GI:550076385
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 669)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 669)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..669
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="03-0378"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="01-Aug-2003"
/note="genotype: CRF01_AE"
gene <1..>669
/gene="pol"
CDS <1..>669
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83826.1"
/db_xref="GI:550076386"
/translation="MDGPKVKQWPLTEEKIKALTEICEEMXKEGKISKIGPENPYNTP
VFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLHKKKSVTVLDVGDAYFS
VPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRRKN
PEIVIYQYVDDLYVSSDLEIGQXRTKIEELRAHLLSWGFFTPDQXHQKEPPFLWMGYE
LHPDR"
BASE COUNT 257 a 112 c 143 g 153 t 4 other
ORIGIN
1 atggatggac caaaggttaa acaatggcca ttgacagaag aaaaaataaa agcattaaca
61 gaaatttgtg aggaaatggr aaaggaagga aaaatctcaa aaattgggcc tgaaaatcca
121 tacaatactc cagtwtttgc tataaagaaa aagaacagca ccagatggag gaaattagta
181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaataccg
241 catccagcag gcttacacaa gaaaaaatca gtaacagtac tagatgtggg ggatgcatat
301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtaca
361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga
421 tcaccagcaa tattccagtg tagcatgaca aaaatcttag agccctttag aagaaaaaat
481 ccagaaatag tgatctatca gtacgtggat gacttgtatg taagttctga tttagaaata
541 gggcagcwca gaacaaaaat agaggagttg agagctcatc tattgagctg gggatttttt
601 acaccagacc aawagcatca gaaggaacct ccattccttt ggatgggata tgaactccat
661 cctgacaga
//
last modified: Tue May 31 10:56 2022