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LOCUS	    KF292325		     669 bp    RNA     linear	VRL 23-OCT-2013
DEFINITION  HIV-1 isolate 03-0378 from Cambodia reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   KF292325
VERSION     KF292325.1 GI:550076385
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 669)
            Show all sequences for reference 1
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Increased Risk of Q151M and K65R Mutations in Patients Failing
	    Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
  JOURNAL   PLoS ONE 8 (8), E73744 (2013)
  PUBMED    24015311
REFERENCE   2 (bases 1 to 669)
            Show all sequences for reference 2
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
	    Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..669
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="03-0378"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="01-Aug-2003"
		     /note="genotype: CRF01_AE"
     gene	     <1..>669
		     /gene="pol"
     CDS	     <1..>669
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AGX83826.1"
		     /db_xref="GI:550076386"
		     /translation="MDGPKVKQWPLTEEKIKALTEICEEMXKEGKISKIGPENPYNTP
		     VFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLHKKKSVTVLDVGDAYFS
		     VPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRRKN
		     PEIVIYQYVDDLYVSSDLEIGQXRTKIEELRAHLLSWGFFTPDQXHQKEPPFLWMGYE
		     LHPDR"
BASE COUNT	257 a	 112 c	  143 g    153 t      4 other
ORIGIN
       1 atggatggac caaaggttaa acaatggcca ttgacagaag aaaaaataaa agcattaaca 
      61 gaaatttgtg aggaaatggr aaaggaagga aaaatctcaa aaattgggcc tgaaaatcca 
     121 tacaatactc cagtwtttgc tataaagaaa aagaacagca ccagatggag gaaattagta 
     181 gatttcagag agctcaataa aagaactcag gacttttggg aagttcaatt aggaataccg 
     241 catccagcag gcttacacaa gaaaaaatca gtaacagtac tagatgtggg ggatgcatat 
     301 ttttcagttc ctttagatga aagctttaga aagtatactg cattcaccat acctagtaca 
     361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgccacaggg atggaaagga 
     421 tcaccagcaa tattccagtg tagcatgaca aaaatcttag agccctttag aagaaaaaat 
     481 ccagaaatag tgatctatca gtacgtggat gacttgtatg taagttctga tttagaaata 
     541 gggcagcwca gaacaaaaat agaggagttg agagctcatc tattgagctg gggatttttt 
     601 acaccagacc aawagcatca gaaggaacct ccattccttt ggatgggata tgaactccat 
     661 cctgacaga
//
last modified: Tue May 31 10:56 2022


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