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LOCUS KF273900 630 bp RNA linear VRL 02-OCT-2013
DEFINITION HIV-1 clone R73087 from Thailand pol protein (pol) gene, partial
cds
ACCESSION KF273900
VERSION KF273900.1 GI:546471506
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 630)
Show all sequences for reference 1
AUTHORS Oyomopito,R.A., Chen,Y.-J., Sungkanuparph,S., Kantor,R., Merati,T.,
Yam,W.-C., Sirisanthana,T., Li,P.C.K., Kantipong,P., Phanuphak,P.,
Lee,C.K.C., Kamarulzaman,A., Ditangco,R., Huang,S.-W., Sohn,A.H.,
Law,M. and Chen,Y.M.A.
TITLE Risk group characteristics and viral transmission clusters in
South-East Asian patients infected with human immunodeficiency
virus-1 (HIV-1) circulating recombinant form (CRF) 01_AE and
subtype B.
JOURNAL Kaohsiung. J. Med. Sci.. 31(9); 445-53 (2015)
PUBMED 26362956
REFERENCE 2 (bases 1 to 630)
Show all sequences for reference 2
AUTHORS Oyomopito,R.A., Chen,Y.-J., Sungkanuparph,S., Kantor,R., Merati,T.,
Yam,W., Sirisanthana,T., Li,P.C.K., Kantipong,P., Phanuphak,P.,
Lee,C.K.C., Kamarulzaman,A., Ditangco,R., Sohn,A.H., Law,M. and
Chen,Y.-M.A.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2013) TREAT Asia/amfAR - The Foundation for AIDS
Research, 388 Sukhumvit Road, Suite 2104, Klongtoey, Bangkok 10110,
Thailand
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..630
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/host="homo_sapien"
/db_xref="taxon:11676"
/clone="R73087"
/country="Thailand"
/collection_date="24-Oct-2008"
gene <1..>630
/gene="pol"
CDS <1..>630
/gene="pol"
/note="reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGW99943.1"
/db_xref="GI:546471507"
/translation="CEEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELN
KRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNET
PGIRYQYNVLPQGWKGSPAIFQSSMTRILDPFRAKNPEIVIYQYMDDLYVGSDLEIGQ
HRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIELP"
BASE COUNT 242 a 111 c 133 g 144 t
ORIGIN
1 tgtgaagaga tggaaaagga aggaaaaatc tcaaaaattg ggcctgagaa tccatacaat
61 actccagtat ttgctataaa gaaaaaggac agcaccaaat ggaggaaatt agtagatttc
121 agagagctca ataaaagaac tcaggacttt tgggaagttc aattaggaat accgcatcca
181 gcaggtctaa aaaagaaaaa atcagtaaca gtactagatg tgggagatgc atatttttca
241 gttcctttag atgaaagctt tagaaagtat actgcattca ccatacctag tacaaacaat
301 gagacaccag gaatcagata tcagtataat gtgctgccac agggatggaa aggatcaccg
361 gcaatattcc agagtagcat gacaagaatc ttagatccct ttagagcaaa aaatccagaa
421 atagttatct atcaatacat ggatgatttg tatgtaggat ctgatttaga aatagggcag
481 cacagaacaa aaatagagga gctaagagct catctattga gctggggatt tactacacca
541 gacaaaaagc atcagaagga acccccattc ctttggatgg gatatgaact ccatcctgac
601 agatggacag tccagcctat agaactacca
//
last modified: Tue May 31 10:56 2022