HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KF273900		     630 bp    RNA     linear	VRL 02-OCT-2013
DEFINITION  HIV-1 clone R73087 from Thailand pol protein (pol) gene, partial
	    cds
ACCESSION   KF273900
VERSION     KF273900.1 GI:546471506
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Oyomopito,R.A., Chen,Y.-J., Sungkanuparph,S., Kantor,R., Merati,T.,
	    Yam,W.-C., Sirisanthana,T., Li,P.C.K., Kantipong,P., Phanuphak,P.,
	    Lee,C.K.C., Kamarulzaman,A., Ditangco,R., Huang,S.-W., Sohn,A.H.,
	    Law,M. and Chen,Y.M.A.
  TITLE     Risk group characteristics and viral transmission clusters in
	    South-East Asian patients infected with human immunodeficiency
	    virus-1 (HIV-1) circulating recombinant form (CRF) 01_AE and
	    subtype B.
  JOURNAL   Kaohsiung. J. Med. Sci.. 31(9); 445-53 (2015)
  PUBMED    26362956
REFERENCE   2 (bases 1 to 630)
            Show all sequences for reference 2
  AUTHORS   Oyomopito,R.A., Chen,Y.-J., Sungkanuparph,S., Kantor,R., Merati,T.,
	    Yam,W., Sirisanthana,T., Li,P.C.K., Kantipong,P., Phanuphak,P.,
	    Lee,C.K.C., Kamarulzaman,A., Ditangco,R., Sohn,A.H., Law,M. and
	    Chen,Y.-M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2013) TREAT Asia/amfAR - The Foundation for AIDS
	    Research, 388 Sukhumvit Road, Suite 2104, Klongtoey, Bangkok 10110,
	    Thailand
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /host="homo_sapien"
		     /db_xref="taxon:11676"
		     /clone="R73087"
		     /country="Thailand"
		     /collection_date="24-Oct-2008"
     gene	     <1..>630
		     /gene="pol"
     CDS	     <1..>630
		     /gene="pol"
		     /note="reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGW99943.1"
		     /db_xref="GI:546471507"
		     /translation="CEEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELN
		     KRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNET
		     PGIRYQYNVLPQGWKGSPAIFQSSMTRILDPFRAKNPEIVIYQYMDDLYVGSDLEIGQ
		     HRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIELP"
BASE COUNT	242 a	 111 c	  133 g    144 t
ORIGIN
       1 tgtgaagaga tggaaaagga aggaaaaatc tcaaaaattg ggcctgagaa tccatacaat 
      61 actccagtat ttgctataaa gaaaaaggac agcaccaaat ggaggaaatt agtagatttc 
     121 agagagctca ataaaagaac tcaggacttt tgggaagttc aattaggaat accgcatcca 
     181 gcaggtctaa aaaagaaaaa atcagtaaca gtactagatg tgggagatgc atatttttca 
     241 gttcctttag atgaaagctt tagaaagtat actgcattca ccatacctag tacaaacaat 
     301 gagacaccag gaatcagata tcagtataat gtgctgccac agggatggaa aggatcaccg 
     361 gcaatattcc agagtagcat gacaagaatc ttagatccct ttagagcaaa aaatccagaa 
     421 atagttatct atcaatacat ggatgatttg tatgtaggat ctgatttaga aatagggcag 
     481 cacagaacaa aaatagagga gctaagagct catctattga gctggggatt tactacacca 
     541 gacaaaaagc atcagaagga acccccattc ctttggatgg gatatgaact ccatcctgac 
     601 agatggacag tccagcctat agaactacca 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health