HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KF214244		    1482 bp    RNA     linear	VRL 10-NOV-2013
DEFINITION  Simian immunodeficiency virus isolate BWC02 gag protein (gag) gene,
	    complete cds
ACCESSION   KF214244
VERSION     KF214244.1 GI:556592521
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1482)
            Show all sequences for reference 1
  AUTHORS   Lauck,M., Switzer,W.M., Sibley,S.D., Hyeroba,D., Tumukunde,A.,
	    Weny,G., Taylor,B., Shankar,A., Ting,N., Chapman,C.A.,
	    Friedrich,T.C., Goldberg,T.L. and O Connor,D.H.
  TITLE     Discovery and full genome characterization of two highly divergent
	    simian immunodeficiency viruses infecting black-and-white colobus
	    monkeys (Colobus guereza) in Kibale National Park, Uganda
  JOURNAL   Retrovirology 10 (1), 107 (2013)
  PUBMED    24139306
REFERENCE   2 (bases 1 to 1482)
            Show all sequences for reference 2
  AUTHORS   Lauck,M., Switzer,W.M., Sibley,S.D., Hyeroba,D., Tumukunde,A.,
	    Weny,G., Chapman,C.A., Friedrich,T.C., Goldberg,T.L. and
	    O'Connor,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2013) Wisconsin National Primate Research Center,
	    University of Wisconsin-Madison, 555 Science Dr, Madison, WI 53711,
	    USA
COMMENT     ##Assembly-Data-START## Assembly Method CLC Genomics Workbench v. 6
	    Sequencing Technology Illumina ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1482
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="BWC02"
		     /host="Colobus guereza (black-and-white colobus)"
		     /db_xref="taxon:11723"
		     /country="Uganda"
		     /collection_date="01-Jul-2010"
     gene	     1..1482
		     /gene="gag"
     CDS	     1..1482
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AGZ63445.1"
		     /db_xref="GI:556592522"
		     /translation="MGNEQGLLGKKTVEKLQKVKLKKGKKGCYKVKHIRWMCTEVERL
		     QLNIELLKSAQGVGKILEQVQPLVVTGSEVLKSLWGMLCVCYCLHRGWDVEHTQEAEG
		     RVAEAMKKQAMIEQAERTEQQAAQEELEKRQEMPIVTGPQGPMHSPLSPRTLAAWVKC
		     VEQGITPSLAPMFLAYSTGAIAYDMNLMLNILDTHQGFLQVLKEELNKKAEEYDLTHP
		     VPQPQQQGALRQPTASDIMGTTSSVAEQVAWGEPVANIYRGWIVQSLEKVIQIARPSS
		     VLDIRQGAKEDFKSYVDRFFSALRAEPAGGEIKQWMANNLLIQHANPECKRILKGLQK
		     PSLEDMLSACQGVGGPDYKAKVLAEAMQGMQKIGMVEVSTARCFNCGQVGHLARNCPK
		     PRQFPTRGRGGSRGRGIMRGGIRRGGQAKCFGCGQYGHIQATCPNKQVNFLGTPGGMD
		     LQTAVFPPKMSQRKESSKGEMDREGIYPSLKSLFGEDLLSGQN"
BASE COUNT	500 a	 280 c	  429 g    273 t
ORIGIN
       1 atgggcaacg agcagggact gttagggaaa aagactgtag agaagttgca aaaggtgaag 
      61 ttaaaaaagg gaaagaaagg atgttacaag gtaaagcaca tcaggtggat gtgcacagaa 
     121 gtggagagat tgcaactaaa catcgagttg ctaaagtcag cacaaggagt aggaaagatc 
     181 cttgagcaag tgcagcctct ggtagtcaca ggttcagagg tgctgaaaag cctttgggga 
     241 atgctctgtg tatgctactg cttgcataga ggatgggacg tagagcacac tcaagaggcg 
     301 gaagggagag tagcagaggc catgaaaaaa caggccatga tagagcaagc agaaagaaca 
     361 gaacaacagg cagcacagga agaactagag aaaaggcagg aaatgccaat agtaacaggg 
     421 ccacaagggc ctatgcatag ccccctaagt ccaaggactt tggcagcatg ggtaaagtgt 
     481 gttgagcagg ggatcactcc ctcccttgct ccaatgtttc tagcatactc cacgggagcg 
     541 atagcatatg acatgaactt gatgttaaac atcttggata cccatcaagg gttcctccag 
     601 gtcttaaagg aggaactaaa taagaaggca gaggagtatg atttgacaca cccagtgcca 
     661 caacctcaac agcaaggggc actaaggcag cccacggctt cagacatcat ggggacaaca 
     721 agctcagtgg cagaacaagt agcatgggga gagccagtag caaacattta tagaggatgg 
     781 atagtgcaaa gtttggagaa ggtaattcag atagcaagac ctagctcagt tttggacatc 
     841 agacaaggag caaaagagga ttttaaaagt tatgtagaca gattcttctc agcattaagg 
     901 gcagaaccag caggaggaga aatcaagcaa tggatggcaa acaatttgct aattcagcat 
     961 gccaatccag aatgcaaaag gatcttgaaa ggattgcaga agccctcctt ggaagacatg 
    1021 ctgagtgcat gccaaggagt aggaggacca gactataaag ccaaggtcct agcagaagcc 
    1081 atgcaaggga tgcaaaagat aggcatggtg gaggtgagca cagctaggtg cttcaattgt 
    1141 gggcaggtag gccatttggc aaggaactgc cctaagccca gacagtttcc aactagggga 
    1201 agaggaggct caagaggaag aggaataatg agaggaggaa taagaagagg gggacaagcc 
    1261 aagtgctttg gatgtggaca atatgggcac atccaagcaa cctgccctaa taagcaggtg 
    1321 aattttttag ggacaccagg ggggatggac ctacagacag ctgtcttccc cccaaagatg 
    1381 agtcagagga aggaatcctc caagggggag atggacagag agggaatcta tccctccttg 
    1441 aaatccctct ttggagaaga ccttttgtct gggcagaatt ag
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health