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LOCUS KF214244 1482 bp RNA linear VRL 10-NOV-2013
DEFINITION Simian immunodeficiency virus isolate BWC02 gag protein (gag) gene,
complete cds
ACCESSION KF214244
VERSION KF214244.1 GI:556592521
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1482)
Show all sequences for reference 1
AUTHORS Lauck,M., Switzer,W.M., Sibley,S.D., Hyeroba,D., Tumukunde,A.,
Weny,G., Taylor,B., Shankar,A., Ting,N., Chapman,C.A.,
Friedrich,T.C., Goldberg,T.L. and O Connor,D.H.
TITLE Discovery and full genome characterization of two highly divergent
simian immunodeficiency viruses infecting black-and-white colobus
monkeys (Colobus guereza) in Kibale National Park, Uganda
JOURNAL Retrovirology 10 (1), 107 (2013)
PUBMED 24139306
REFERENCE 2 (bases 1 to 1482)
Show all sequences for reference 2
AUTHORS Lauck,M., Switzer,W.M., Sibley,S.D., Hyeroba,D., Tumukunde,A.,
Weny,G., Chapman,C.A., Friedrich,T.C., Goldberg,T.L. and
O'Connor,D.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2013) Wisconsin National Primate Research Center,
University of Wisconsin-Madison, 555 Science Dr, Madison, WI 53711,
USA
COMMENT ##Assembly-Data-START## Assembly Method CLC Genomics Workbench v. 6
Sequencing Technology Illumina ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1482
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="BWC02"
/host="Colobus guereza (black-and-white colobus)"
/db_xref="taxon:11723"
/country="Uganda"
/collection_date="01-Jul-2010"
gene 1..1482
/gene="gag"
CDS 1..1482
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AGZ63445.1"
/db_xref="GI:556592522"
/translation="MGNEQGLLGKKTVEKLQKVKLKKGKKGCYKVKHIRWMCTEVERL
QLNIELLKSAQGVGKILEQVQPLVVTGSEVLKSLWGMLCVCYCLHRGWDVEHTQEAEG
RVAEAMKKQAMIEQAERTEQQAAQEELEKRQEMPIVTGPQGPMHSPLSPRTLAAWVKC
VEQGITPSLAPMFLAYSTGAIAYDMNLMLNILDTHQGFLQVLKEELNKKAEEYDLTHP
VPQPQQQGALRQPTASDIMGTTSSVAEQVAWGEPVANIYRGWIVQSLEKVIQIARPSS
VLDIRQGAKEDFKSYVDRFFSALRAEPAGGEIKQWMANNLLIQHANPECKRILKGLQK
PSLEDMLSACQGVGGPDYKAKVLAEAMQGMQKIGMVEVSTARCFNCGQVGHLARNCPK
PRQFPTRGRGGSRGRGIMRGGIRRGGQAKCFGCGQYGHIQATCPNKQVNFLGTPGGMD
LQTAVFPPKMSQRKESSKGEMDREGIYPSLKSLFGEDLLSGQN"
BASE COUNT 500 a 280 c 429 g 273 t
ORIGIN
1 atgggcaacg agcagggact gttagggaaa aagactgtag agaagttgca aaaggtgaag
61 ttaaaaaagg gaaagaaagg atgttacaag gtaaagcaca tcaggtggat gtgcacagaa
121 gtggagagat tgcaactaaa catcgagttg ctaaagtcag cacaaggagt aggaaagatc
181 cttgagcaag tgcagcctct ggtagtcaca ggttcagagg tgctgaaaag cctttgggga
241 atgctctgtg tatgctactg cttgcataga ggatgggacg tagagcacac tcaagaggcg
301 gaagggagag tagcagaggc catgaaaaaa caggccatga tagagcaagc agaaagaaca
361 gaacaacagg cagcacagga agaactagag aaaaggcagg aaatgccaat agtaacaggg
421 ccacaagggc ctatgcatag ccccctaagt ccaaggactt tggcagcatg ggtaaagtgt
481 gttgagcagg ggatcactcc ctcccttgct ccaatgtttc tagcatactc cacgggagcg
541 atagcatatg acatgaactt gatgttaaac atcttggata cccatcaagg gttcctccag
601 gtcttaaagg aggaactaaa taagaaggca gaggagtatg atttgacaca cccagtgcca
661 caacctcaac agcaaggggc actaaggcag cccacggctt cagacatcat ggggacaaca
721 agctcagtgg cagaacaagt agcatgggga gagccagtag caaacattta tagaggatgg
781 atagtgcaaa gtttggagaa ggtaattcag atagcaagac ctagctcagt tttggacatc
841 agacaaggag caaaagagga ttttaaaagt tatgtagaca gattcttctc agcattaagg
901 gcagaaccag caggaggaga aatcaagcaa tggatggcaa acaatttgct aattcagcat
961 gccaatccag aatgcaaaag gatcttgaaa ggattgcaga agccctcctt ggaagacatg
1021 ctgagtgcat gccaaggagt aggaggacca gactataaag ccaaggtcct agcagaagcc
1081 atgcaaggga tgcaaaagat aggcatggtg gaggtgagca cagctaggtg cttcaattgt
1141 gggcaggtag gccatttggc aaggaactgc cctaagccca gacagtttcc aactagggga
1201 agaggaggct caagaggaag aggaataatg agaggaggaa taagaagagg gggacaagcc
1261 aagtgctttg gatgtggaca atatgggcac atccaagcaa cctgccctaa taagcaggtg
1321 aattttttag ggacaccagg ggggatggac ctacagacag ctgtcttccc cccaaagatg
1381 agtcagagga aggaatcctc caagggggag atggacagag agggaatcta tccctccttg
1441 aaatccctct ttggagaaga ccttttgtct gggcagaatt ag
//
last modified: Tue May 31 10:56 2022