View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KC791317 1069 bp RNA linear VRL 12-JUN-2013
DEFINITION HIV-1 isolate R74098 from Thailand pol protein (pol) gene, partial
cds
ACCESSION KC791317
VERSION KC791317.1 GI:510948783
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1069)
Show all sequences for reference 1
AUTHORS Kiertiburanakul,S., Chaiwarith,R., Sirivichayakul,S., Ditangco,R.,
Jiamsakul,A., Li,P.C.K., Kantipong,P., Lee,C., Ratanasuwan,W.,
Kamarulzaman,A., Sohn,A.H. and Sungkanuparph,S.
TITLE Comparisons of Primary HIV-1 Drug Resistance between Recent and
Chronic HIV-1 Infection within a Sub-Regional Cohort of Asian
Patients.
JOURNAL PLoS. One.. 8(6); e62057 (2013)
PUBMED 23826076
REFERENCE 2 (bases 1 to 1069)
Show all sequences for reference 2
AUTHORS Kiertiburanakul,S., Chaiwarith,R., Sirivichayakul,S., Ditangco,R.,
Jiamsakul,A., Li,P.C.K., Kantipong,P., Lee,C., Ratanasuwan,W.,
Kamarulzaman,A., Sohn,A.H. and Sungkanuparph,S.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2013) Faculty of Medicine, Ramathibodi Hospital,
Mahidol University, 270 Rama 6 Road, Bangkok 10400, Thailand
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1069
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="R74098"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Thailand"
/collection_date="03-Sep-2009"
gene <1..>1069
/gene="pol"
CDS <1..>1069
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN54169.1"
/db_xref="GI:510948784"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVXQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIDTVPVXLKPGMDGPKVKQWPLTEEPKKALTEICKEMEEEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPX
IXIYQYMDDLYVGSDLEIXQHRTKIEELRAHLLXWGFTTPDKKHQKEPPFLWMGYELH
PDXWTVQPIELPEKDSWTVNDI"
BASE COUNT 413 a 174 c 215 g 248 t 19 other
ORIGIN
1 cctcaaatca ctctttggca acgaccyctt gtcacagtaa aaataggagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaargtaar gcaatatgat
181 cagatactta tagaaatttg tggaaaaagg gctataggta cagtrttagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaatttccca
301 atyagtccta ttgacactgt accagtawca ttaaagccag gaatggatgg accaaaggtt
361 aaacagtggc cattgacaga ggaaccaaaa aaagcactaa cagaaatttg taaagaratg
421 gaagaggaag gaaaaatytc aaaaattgga cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaggatag cactaaatgg agraaattag tagatttcag agagctcaat
541 aaaagaactc aggacttttg ggaagttcaa ttaggaatac cgcatccagc aggtttgaaa
601 aagaaaaaat cagtaacagt actagatgtg ggagatgcat ayttttcagt tcctttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaacaatga gacaccagga
721 atcagatatc artacaatgt gctgccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agaataaaaa atccagahat arttatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagrgcagca cagaacaaaa
901 atagaggagc taagagctca tctattgagm tggggattya cyacaccaga caaaaarcat
961 cagaaggaac ctccattcct ttggatggga tatgaactcc atcctgacar atggacagtc
1021 cagcctatag aactaccaga aaaagacagc tggactgtca atgatatac
//
last modified: Tue May 31 10:56 2022