View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KC634203 2553 bp RNA linear VRL 22-OCT-2013
DEFINITION HIV-1 isolate 052_2899_P_G10 from Malawi envelope glycoprotein
(env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
and tat protein (tat) genes, partial cds
ACCESSION KC634203
VERSION KC634203.1 GI:485450981
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2553)
Show all sequences for reference 1
AUTHORS Ping,L.H., Jabara,C.B., Rodrigo,A.G., Hudelson,S.E.,
Piwowar-Manning,E., Wang,L., Eshleman,S.H., Cohen,M.S. and
Swanstrom,R.
TITLE HIV-1 Transmission during Early Antiretroviral Therapy: Evaluation
of Two HIV-1 Transmission Events in the HPTN 052 Prevention Study
JOURNAL PLoS ONE 8 (9), E71557 (2013)
PUBMED 24086252
REFERENCE 2 (bases 1 to 2553)
Show all sequences for reference 2
AUTHORS Ping,L.-H., Jabara,C., Rodrigo,A., Hudelson,S., Piwowar-Manning,E.,
Wang,L., Eshleman,S., Cohen,M. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2013) Lineberger Comprehensive Cancer Center,
University of North Carolina at Chapel Hill, 450 West Drive, Chapel
Hill, NC 27599, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Amplification Strategy SGA
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2553
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="052_2899_P_G10"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="23-Dec-2009"
/note="subtype: C"
gene 1..2553
/gene="env"
CDS 1..2553
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGK82765.1"
/db_xref="GI:485450985"
/translation="MTVMGTLRNYQQWWIWGILGFWMLMICNGGNLWVTVYYGVPVWK
EAKTTLFCASDAKAYEKEVHNIWATHACVPTDPNPQELILENVTETFNMWKNDMVDQM
HKDIISLWDQSLKPCVKLTPLCVTLNCTNVTYTNSTNSTLDDPERKNCSFNVTTELRD
KKEKVHALFYRLDIVPLNESSNSSIYRLINCNTSVITQACPKVTFDPIPIYYCAPAGY
AILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEKEIIIRSENLTDNV
KTIIVHLNESVEIECTRPDNNTRKSIRIGPGQSFYATEKIIGDIRQAHCNISGGKWNK
TLQRVREKLKVHFPNKTIEFQPSSGGDLEITTHSFNCRGEFFYCDTSNLFNSSFNSTS
NSTITLQCRIKQIINMWQEAGRAMYAPPIEGNITCKSNITGLLLTRDGGTDNNNTDNN
KTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKRAVGIGAVLLG
FLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQAR
VLALERYLQDQQLLGLWGCSGKLICTTTVSWNSTWNNKTYDEIWKNMTWMQWDKEISN
YTDSIYRLLEESQNQQEKNEKDLLALDSWNNLWNWFDITKWLWYIKIFIMIVGGLIGL
RIIFAVFSIVNRVRQGYSPLSLQTLIPNPRGPDRLGRIEEEGGEQDRDRSIRLVNGFL
PLVWDDLRNLCLFSYHRLRDLILIAVRAVELLGRSSLRGLQRGWEALKYLGGLVQYWG
LELKRSAISLLDFLAITVAEGTDRIIEAAQRVCRVIRNIPTRIRQGLEAALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AGK82764.1"
/db_xref="GI:485450984"
/translation="DSDGDIEELSTMVDMGNLRLLDANDL"
gene <2116..2363
/gene="rev"
CDS <2116..2363
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AGK82763.1"
/db_xref="GI:485450983"
/translation="PYPKPEGTRQARKNRRRRWRARQRQIHSLSERILTTCLGRSAEP
VPLQLPPIERLNINCSESSGTSGTQQPQGTAEGVGSP"
gene <2116..2206
/gene="tat"
CDS <2116..2206
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AGK82762.1"
/db_xref="GI:485450982"
/translation="PLSQTRGDPTGSEESKKKVESKTETDPFA"
BASE COUNT 910 a 432 c 582 g 629 t
ORIGIN
1 atgacagtga tggggacatt gaggaattat caacaatggt ggatatgggg aatcttaggc
61 ttttggatgc taatgatctg taatgggggg aacttgtggg tcacagtcta ctatggggta
121 cctgtgtgga aagaagcaaa aactacttta ttttgtgctt cagatgccaa agcatatgag
181 aaagaagtgc ataatatctg ggctacacat gcctgtgtcc ccacagaccc caatccacaa
241 gaactaattt tggaaaatgt aacagaaact tttaatatgt ggaaaaatga catggtggat
301 cagatgcata aagatataat cagtttatgg gatcaaagcc tcaagccatg tgtaaagttg
361 accccactct gtgtcacttt aaactgtaca aatgtaacct acaccaatag caccaatagc
421 accctagatg atccagaaag aaaaaattgc tcttttaatg tgaccacaga attaagagat
481 aagaaagaga aagtacatgc acttttttat agacttgata tagtaccact taatgagagt
541 agtaactcta gtatatatag attaattaat tgtaatacct cagtcataac acaagcctgt
601 ccaaaggtca cttttgaccc aattcctata tactattgtg ctccagctgg ttatgcgatt
661 ctaaagtgta ataataagac attcaatgga acaggaccat gcaataatgt cagcacagta
721 caatgtacac atggaattaa gccagtggta tcaactcaac tactgttaaa tggtagccta
781 gcagaaaaag agataataat tagatctgaa aatctgacag acaatgtcaa aacaataata
841 gtacatctca atgaatctgt agagattgag tgtacaagac cagacaataa tacaagaaaa
901 agtataagaa taggaccagg gcagtcattc tatgcaacag aaaagataat aggggatata
961 agacaagcac attgtaacat tagtggagga aagtggaata aaactttaca aagggtaagg
1021 gaaaaattaa aagtacactt cccgaataaa acaatagaat ttcaaccatc ctcaggaggg
1081 gacctagaaa ttacaacaca tagctttaat tgtagaggag agtttttcta ttgcgataca
1141 tcaaacttgt ttaatagtag ttttaatagt acttcaaatt caactatcac actccagtgt
1201 agaataaaac agattataaa catgtggcag gaggcaggac gagcaatgta tgcccctccc
1261 attgaaggaa acataacatg taagtcaaat atcacaggac tattattgac acgtgatgga
1321 gggacagata ataacaatac agataataac aagacagaga cattcagacc tggaggagga
1381 gatatgagag acaattggag aagtgaacta tataaatata aagtagtaga aattaagccc
1441 ttaggaatag cacctactaa ggcaaaaagg agagtggtgg agagagaaaa aagagcagtg
1501 ggaataggag ctgtactcct tgggttcttg ggagcagcag gaagcactat gggcgcggcg
1561 tcattaacgc tgacggtaca ggccagacaa ttattgtctg gtatagtgca acagcaaaac
1621 aatttgctga gggctataga ggcgcaacag catatgttgc aactcacggt ctggggcatt
1681 aagcagctcc aggcaagagt cctggcccta gaaagatacc tacaggatca acagctccta
1741 ggtttgtggg gctgctctgg aaaactcatc tgcaccacta ctgtgtcttg gaactctact
1801 tggaataata aaacttacga tgagatttgg aaaaacatga cctggatgca gtgggataaa
1861 gagattagta actacacaga ctcaatatac aggttacttg aagaatcgca aaaccagcaa
1921 gagaaaaatg aaaaagattt actagcattg gacagttgga acaatctgtg gaattggttt
1981 gacataacaa aatggctgtg gtatataaaa atattcataa tgatagtagg aggcttgata
2041 ggtttaagaa taatttttgc tgtgttttct atagtgaata gagttaggca gggatactca
2101 cctttgtcgt tgcagaccct tatcccaaac ccgaggggac ccgacaggct cggaagaatc
2161 gaagaagaag gtggagagca agacagagac agatccattc gcttagtgaa cggattctta
2221 ccacttgtct gggacgatct gcggaacctg tgcctcttca gctaccaccg attgagagac
2281 ttaatattaa ttgcagtgag agcagtggaa cttctgggac gcagcagcct caggggactg
2341 cagagggggt gggaagccct taagtatctg ggaggtcttg tgcagtattg gggtctagaa
2401 ctaaaaagga gtgctattag tttgcttgat ttcttagcaa taacagtagc tgaaggaact
2461 gatagaatta tagaagcagc acaaagagtt tgtagagtta tccgcaacat acctacaaga
2521 ataagacagg gattagaagc agctttgcta taa
//
last modified: Tue May 31 10:56 2022