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LOCUS	    KC634203		    2553 bp    RNA     linear	VRL 22-OCT-2013
DEFINITION  HIV-1 isolate 052_2899_P_G10 from Malawi envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   KC634203
VERSION     KC634203.1 GI:485450981
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2553)
            Show all sequences for reference 1
  AUTHORS   Ping,L.H., Jabara,C.B., Rodrigo,A.G., Hudelson,S.E.,
	    Piwowar-Manning,E., Wang,L., Eshleman,S.H., Cohen,M.S. and
	    Swanstrom,R.
  TITLE     HIV-1 Transmission during Early Antiretroviral Therapy: Evaluation
	    of Two HIV-1 Transmission Events in the HPTN 052 Prevention Study
  JOURNAL   PLoS ONE 8 (9), E71557 (2013)
  PUBMED    24086252
REFERENCE   2 (bases 1 to 2553)
            Show all sequences for reference 2
  AUTHORS   Ping,L.-H., Jabara,C., Rodrigo,A., Hudelson,S., Piwowar-Manning,E.,
	    Wang,L., Eshleman,S., Cohen,M. and Swanstrom,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2013) Lineberger Comprehensive Cancer Center,
	    University of North Carolina at Chapel Hill, 450 West Drive, Chapel
	    Hill, NC 27599, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Amplification Strategy SGA
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2553
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="052_2899_P_G10"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="23-Dec-2009"
		     /note="subtype: C"
     gene	     1..2553
		     /gene="env"
     CDS	     1..2553
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGK82765.1"
		     /db_xref="GI:485450985"
		     /translation="MTVMGTLRNYQQWWIWGILGFWMLMICNGGNLWVTVYYGVPVWK
		     EAKTTLFCASDAKAYEKEVHNIWATHACVPTDPNPQELILENVTETFNMWKNDMVDQM
		     HKDIISLWDQSLKPCVKLTPLCVTLNCTNVTYTNSTNSTLDDPERKNCSFNVTTELRD
		     KKEKVHALFYRLDIVPLNESSNSSIYRLINCNTSVITQACPKVTFDPIPIYYCAPAGY
		     AILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEKEIIIRSENLTDNV
		     KTIIVHLNESVEIECTRPDNNTRKSIRIGPGQSFYATEKIIGDIRQAHCNISGGKWNK
		     TLQRVREKLKVHFPNKTIEFQPSSGGDLEITTHSFNCRGEFFYCDTSNLFNSSFNSTS
		     NSTITLQCRIKQIINMWQEAGRAMYAPPIEGNITCKSNITGLLLTRDGGTDNNNTDNN
		     KTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKRRVVEREKRAVGIGAVLLG
		     FLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQAR
		     VLALERYLQDQQLLGLWGCSGKLICTTTVSWNSTWNNKTYDEIWKNMTWMQWDKEISN
		     YTDSIYRLLEESQNQQEKNEKDLLALDSWNNLWNWFDITKWLWYIKIFIMIVGGLIGL
		     RIIFAVFSIVNRVRQGYSPLSLQTLIPNPRGPDRLGRIEEEGGEQDRDRSIRLVNGFL
		     PLVWDDLRNLCLFSYHRLRDLILIAVRAVELLGRSSLRGLQRGWEALKYLGGLVQYWG
		     LELKRSAISLLDFLAITVAEGTDRIIEAAQRVCRVIRNIPTRIRQGLEAALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AGK82764.1"
		     /db_xref="GI:485450984"
		     /translation="DSDGDIEELSTMVDMGNLRLLDANDL"
     gene	     <2116..2363
		     /gene="rev"
     CDS	     <2116..2363
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGK82763.1"
		     /db_xref="GI:485450983"
		     /translation="PYPKPEGTRQARKNRRRRWRARQRQIHSLSERILTTCLGRSAEP
		     VPLQLPPIERLNINCSESSGTSGTQQPQGTAEGVGSP"
     gene	     <2116..2206
		     /gene="tat"
     CDS	     <2116..2206
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGK82762.1"
		     /db_xref="GI:485450982"
		     /translation="PLSQTRGDPTGSEESKKKVESKTETDPFA"
BASE COUNT	910 a	 432 c	  582 g    629 t
ORIGIN
       1 atgacagtga tggggacatt gaggaattat caacaatggt ggatatgggg aatcttaggc 
      61 ttttggatgc taatgatctg taatgggggg aacttgtggg tcacagtcta ctatggggta 
     121 cctgtgtgga aagaagcaaa aactacttta ttttgtgctt cagatgccaa agcatatgag 
     181 aaagaagtgc ataatatctg ggctacacat gcctgtgtcc ccacagaccc caatccacaa 
     241 gaactaattt tggaaaatgt aacagaaact tttaatatgt ggaaaaatga catggtggat 
     301 cagatgcata aagatataat cagtttatgg gatcaaagcc tcaagccatg tgtaaagttg 
     361 accccactct gtgtcacttt aaactgtaca aatgtaacct acaccaatag caccaatagc 
     421 accctagatg atccagaaag aaaaaattgc tcttttaatg tgaccacaga attaagagat 
     481 aagaaagaga aagtacatgc acttttttat agacttgata tagtaccact taatgagagt 
     541 agtaactcta gtatatatag attaattaat tgtaatacct cagtcataac acaagcctgt 
     601 ccaaaggtca cttttgaccc aattcctata tactattgtg ctccagctgg ttatgcgatt 
     661 ctaaagtgta ataataagac attcaatgga acaggaccat gcaataatgt cagcacagta 
     721 caatgtacac atggaattaa gccagtggta tcaactcaac tactgttaaa tggtagccta 
     781 gcagaaaaag agataataat tagatctgaa aatctgacag acaatgtcaa aacaataata 
     841 gtacatctca atgaatctgt agagattgag tgtacaagac cagacaataa tacaagaaaa 
     901 agtataagaa taggaccagg gcagtcattc tatgcaacag aaaagataat aggggatata 
     961 agacaagcac attgtaacat tagtggagga aagtggaata aaactttaca aagggtaagg 
    1021 gaaaaattaa aagtacactt cccgaataaa acaatagaat ttcaaccatc ctcaggaggg 
    1081 gacctagaaa ttacaacaca tagctttaat tgtagaggag agtttttcta ttgcgataca 
    1141 tcaaacttgt ttaatagtag ttttaatagt acttcaaatt caactatcac actccagtgt 
    1201 agaataaaac agattataaa catgtggcag gaggcaggac gagcaatgta tgcccctccc 
    1261 attgaaggaa acataacatg taagtcaaat atcacaggac tattattgac acgtgatgga 
    1321 gggacagata ataacaatac agataataac aagacagaga cattcagacc tggaggagga 
    1381 gatatgagag acaattggag aagtgaacta tataaatata aagtagtaga aattaagccc 
    1441 ttaggaatag cacctactaa ggcaaaaagg agagtggtgg agagagaaaa aagagcagtg 
    1501 ggaataggag ctgtactcct tgggttcttg ggagcagcag gaagcactat gggcgcggcg 
    1561 tcattaacgc tgacggtaca ggccagacaa ttattgtctg gtatagtgca acagcaaaac 
    1621 aatttgctga gggctataga ggcgcaacag catatgttgc aactcacggt ctggggcatt 
    1681 aagcagctcc aggcaagagt cctggcccta gaaagatacc tacaggatca acagctccta 
    1741 ggtttgtggg gctgctctgg aaaactcatc tgcaccacta ctgtgtcttg gaactctact 
    1801 tggaataata aaacttacga tgagatttgg aaaaacatga cctggatgca gtgggataaa 
    1861 gagattagta actacacaga ctcaatatac aggttacttg aagaatcgca aaaccagcaa 
    1921 gagaaaaatg aaaaagattt actagcattg gacagttgga acaatctgtg gaattggttt 
    1981 gacataacaa aatggctgtg gtatataaaa atattcataa tgatagtagg aggcttgata 
    2041 ggtttaagaa taatttttgc tgtgttttct atagtgaata gagttaggca gggatactca 
    2101 cctttgtcgt tgcagaccct tatcccaaac ccgaggggac ccgacaggct cggaagaatc 
    2161 gaagaagaag gtggagagca agacagagac agatccattc gcttagtgaa cggattctta 
    2221 ccacttgtct gggacgatct gcggaacctg tgcctcttca gctaccaccg attgagagac 
    2281 ttaatattaa ttgcagtgag agcagtggaa cttctgggac gcagcagcct caggggactg 
    2341 cagagggggt gggaagccct taagtatctg ggaggtcttg tgcagtattg gggtctagaa 
    2401 ctaaaaagga gtgctattag tttgcttgat ttcttagcaa taacagtagc tgaaggaact 
    2461 gatagaatta tagaagcagc acaaagagtt tgtagagtta tccgcaacat acctacaaga 
    2521 ataagacagg gattagaagc agctttgcta taa
//
last modified: Tue May 31 10:56 2022


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