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LOCUS KC634160 2592 bp RNA linear VRL 22-OCT-2013
DEFINITION HIV-1 isolate 052_1168_P_H6 from Malawi envelope glycoprotein (env)
gene, complete cds; and vpu protein (vpu), rev protein (rev), and
tat protein (tat) genes, partial cds
ACCESSION KC634160
VERSION KC634160.1 GI:485450758
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2592)
Show all sequences for reference 1
AUTHORS Ping,L.H., Jabara,C.B., Rodrigo,A.G., Hudelson,S.E.,
Piwowar-Manning,E., Wang,L., Eshleman,S.H., Cohen,M.S. and
Swanstrom,R.
TITLE HIV-1 Transmission during Early Antiretroviral Therapy: Evaluation
of Two HIV-1 Transmission Events in the HPTN 052 Prevention Study
JOURNAL PLoS ONE 8 (9), E71557 (2013)
PUBMED 24086252
REFERENCE 2 (bases 1 to 2592)
Show all sequences for reference 2
AUTHORS Ping,L.-H., Jabara,C., Rodrigo,A., Hudelson,S., Piwowar-Manning,E.,
Wang,L., Eshleman,S., Cohen,M. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2013) Lineberger Comprehensive Cancer Center,
University of North Carolina at Chapel Hill, 450 West Drive, Chapel
Hill, NC 27599, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Amplification Strategy SGA
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2592
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="052_1168_P_H6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="21-Jun-2010"
/note="subtype: C"
gene 1..2592
/gene="env"
CDS 1..2592
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGK82593.1"
/db_xref="GI:485450762"
/translation="MRVRGMLRNYPQWWIWGVLGFWMLMICNGTGKLWVTVYYGVPVW
KEAKTTLFCASDARAFDREVHNVWATHACVPTDPNPQEMLLENVTENFNMWKNDMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLRCVNVTSNATQTNNTQVNATHDSAKEREMKNC
SFNATTELRDKKKEVHALFYKLDIVPLDKTNSGEYRLINCNTSTITQACPKVTFDPIP
IHYCAPAGYAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIII
RSKNMTDNSKTIIVHFNESVEIVCIRPGNNTRQSIRIGPGQTFYATGDIIGDIRQAHC
NISKANWTRTLQRVSRKLGEYFPNRTITFTSSAGGDPEITTHSFNCRGEFFYCNTSGL
FNGTYPANGTESNSSSPITLPCRIKQIINMWQEVGRAMYAPPIAGNITCTSNITGLLL
TRDGGTGSGTESNSTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRVVER
EKRAVGIGAVFLGFLGAAGSTMGAASITLTVHARQLLSGIVQQQSNLLKAIEAQQHLL
QLTVWGIKQLQARVLAIERYLQDQRLLGIWGCSGKLICTTNVPWNSSWSNRSEQDIWE
NMTWMQWDREINNYTNTIYLLLEESQSQQEKNEKDLLALDKWNSLWNWFDISKWLWYI
KIFIMIVGGLIGLRIVFAVLSIANRVRQGYSPLSFQTLTPNPRGPDRLGRIEEEGGEQ
DRDRSIRLVSGFLSIAWDDLRSLCLFSYHRLRDFILIVARAVELLGRSSLKGLQRGWE
ALKYLGNLVQYWGLELKKSAISLLDTIAIAVAEGTDRIIELIQRICRAIRNIPRRIRQ
GFETALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AGK82592.1"
/db_xref="GI:485450761"
/translation="ESEGDAEELSTMVDMGRLRLLDVNDL"
gene <2155..2402
/gene="rev"
CDS <2155..2402
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AGK82591.1"
/db_xref="GI:485450760"
/translation="PYPEPKGTRQARKNRRRRWRARQRQIHSISQRILVDCLGRSTEP
VPLQLPPIERLHIDCSEGSGTSGTQQSQGTAEGVGSP"
gene <2155..2245
/gene="tat"
CDS <2155..2245
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AGK82590.1"
/db_xref="GI:485450759"
/translation="PLPRTQGDQTGSEESKKKVESKTETDPFD"
BASE COUNT 895 a 457 c 615 g 625 t
ORIGIN
1 atgagagtga gggggatgct gaggaattat ccacaatggt ggatatgggg cgtcttaggc
61 ttttggatgt taatgatttg taatgggacg gggaaattgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaaaactact ctattctgtg catcagatgc tagagcattt
181 gacagagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgc ttttggaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atgaggatat aattagttta tgggaccaaa gcctaaagcc atgtgtaaag
361 ttgaccccac tctgtgtcac tttaagatgt gtaaatgtta ccagtaatgc cacccaaact
421 aataataccc aagttaatgc tacccatgat agtgccaaag agagagaaat gaaaaattgc
481 tctttcaatg caaccacaga gttaagagat aagaaaaagg aagtgcatgc cctgttttat
541 aaacttgata tagtaccact agataagaca aactctggtg agtatagatt aataaattgt
601 aatacctcaa ccataacaca agcttgtcca aaggtcactt ttgatccaat tcctatacat
661 tattgtgctc cagctggtta tgcgattcta aagtgcaata ataagacctt caatgggaca
721 ggaccatgta ctaatgtcag cacagtacaa tgtacacatg gaattaagcc agtggtatca
781 acccaactcc tgttaaatgg tagcctagca gaaggagaga taataattag atctaaaaat
841 atgacagaca attccaaaac aataatagta cattttaatg aatctgtaga gattgtatgt
901 ataaggcccg gcaataacac aagacaaagt ataaggatag gaccaggaca aacattctat
961 gcaacaggag acataatagg agacataaga caagcacatt gtaacattag taaagctaac
1021 tggactagaa ctttacaaag ggtaagtaga aaattaggag aatacttccc caatagaaca
1081 ataacattta catcatctgc aggaggggac ccagaaatta caacacatag ctttaattgc
1141 agaggagaat ttttctattg taatacatca gggctgttta atggtacata cccggctaat
1201 ggtacagaaa gtaactcaag ctcaccaatc acactcccat gcagaataaa acaaattata
1261 aacatgtggc aggaggtagg acgagcaatg tatgctcctc ccattgcagg aaatataaca
1321 tgtacatcaa atatcacggg attactcttg acacgtgatg gaggcacagg aagtggcaca
1381 gaatcaaata gcacagaaac attcagacct ggaggaggag atatgaggga caattggaga
1441 agtgaattat ataaatacaa agtggtagaa attaagccat tgggaatagc acccactacg
1501 gcaaaaagga gagtggtgga gagagaaaaa agagcagtag gaataggagc tgtgttcctt
1561 gggttcttgg gagcagcagg aagcactatg ggcgcggcgt caatcacgct gacggtacat
1621 gccagacaat tgttatctgg tatagtgcaa cagcaaagca atttgctgaa agctatagag
1681 gcgcaacaac atttgttgca actcacggtc tggggcatta agcagctcca ggcaagagtc
1741 ctggctatag aaagatacct gcaggatcaa cggctcctag ggatttgggg ctgctctgga
1801 aaactcatct gcaccactaa tgtgccttgg aactccagtt ggagtaatag atctgaacaa
1861 gatatttggg agaacatgac ctggatgcag tgggatagag aaattaataa ttacacaaac
1921 acaatatact tgttgcttga agaatcgcaa agccaacagg aaaagaatga aaaagattta
1981 ctagcattgg acaaatggaa cagcttgtgg aattggtttg acatatcaaa gtggctgtgg
2041 tatataaaaa tattcataat gatagtagga ggcttgatag gtttaagaat agtttttgct
2101 gtgctctcta tagcgaatag agttaggcag ggatactcac ctttgtcgtt tcagaccctt
2161 accccgaacc caaggggacc agacaggctc ggaagaatcg aagaagaagg tggagagcaa
2221 gacagagaca gatccattcg attagtcagc ggattcttgt cgattgcctg ggacgatcta
2281 cggagcctgt gcctcttcag ctaccaccga ttgagagact tcatattgat tgtagcgagg
2341 gcagtggaac ttctgggacg cagcagtctc aagggactgc agagggggtg ggaagccctt
2401 aagtatctgg gaaatcttgt gcagtattgg ggtctggaac taaagaagag tgctattagt
2461 ctgcttgata ccatagcaat agctgtagct gaaggaacag ataggattat agaattgata
2521 caaagaattt gtagagctat ccgcaacata cctagaagaa taagacaggg ctttgaaaca
2581 gctttgctat aa
//
last modified: Tue May 31 10:56 2022