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LOCUS	    KC634140		    2592 bp    RNA     linear	VRL 22-OCT-2013
DEFINITION  HIV-1 isolate 052_1168_P_B2 from Malawi envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   KC634140
VERSION     KC634140.1 GI:485450654
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2592)
            Show all sequences for reference 1
  AUTHORS   Ping,L.H., Jabara,C.B., Rodrigo,A.G., Hudelson,S.E.,
	    Piwowar-Manning,E., Wang,L., Eshleman,S.H., Cohen,M.S. and
	    Swanstrom,R.
  TITLE     HIV-1 Transmission during Early Antiretroviral Therapy: Evaluation
	    of Two HIV-1 Transmission Events in the HPTN 052 Prevention Study
  JOURNAL   PLoS ONE 8 (9), E71557 (2013)
  PUBMED    24086252
REFERENCE   2 (bases 1 to 2592)
            Show all sequences for reference 2
  AUTHORS   Ping,L.-H., Jabara,C., Rodrigo,A., Hudelson,S., Piwowar-Manning,E.,
	    Wang,L., Eshleman,S., Cohen,M. and Swanstrom,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2013) Lineberger Comprehensive Cancer Center,
	    University of North Carolina at Chapel Hill, 450 West Drive, Chapel
	    Hill, NC 27599, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Amplification Strategy SGA
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2592
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="052_1168_P_B2"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="21-Jun-2010"
		     /note="subtype: C"
     gene	     1..2592
		     /gene="env"
     CDS	     1..2592
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGK82513.1"
		     /db_xref="GI:485450658"
		     /translation="MRVRGMLRNYPQWWIWGVLGFWMLMICNGTGKLWVTVYYGVPVW
		     KEAKTTLFCASDARAFDREVHNVWATHACVPTDPNPQEMLLENVTENFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLRCVNVTSNATQTNNTQVNATHDSAKEREMKNC
		     SFNATTELRDKKKEVHALFYKLDIVPLDKTNSGEYRLINCNTSTITQACPKVTFDPIP
		     IHYCAPAGYAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIII
		     RSKNMTDNSKTIIVHFNESVEIVCIRPGNNTRQSIRIGPGQTFYATGDIIGDIRQAHC
		     NISKANWTRTLQRVSRKLGEYFPNRTITFTSSAGGDPEITTHSFNCRGEFFYCNTSGL
		     FNGTYPANGTESNSSSPITLPCRIKQIINMWQEVGRAMYAPPIAGNITCTSNITGLLL
		     TRDGGTGNGTESNSTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTTAKRRVVER
		     EKRAVGIGAVFLGFLGAAGSTMGAASITLTVHARQLLSGIVQQQSNLLKAIEAQQHLL
		     QLTVWGIKQLQARVLAIERYLQDQRLLGIWGCSGKLICTTNVPWNSSWSNRSEQDIWE
		     NMTWMQWDREINNYTNTIYLLLEESQSQQEKNEKDLLALDKWNSLWNWFDISKWLWYI
		     KIFIMIVGGLIGLRIVFAVLSIANRVRQGYSPLSFQTLTPNPRGPDRLGRIEEEGGEQ
		     DRDRSIRLVSGFLSIAWDDLRSLCLFSYHRLRDFILIVARAVELLGRSSLKGLQRGWE
		     ALKYLGNLVQYWGLELKKSAISLLDTIAIAVAEGTDRIIELIQRICRAIRNIPRRIRQ
		     GFETALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AGK82512.1"
		     /db_xref="GI:485450657"
		     /translation="ESEGDAEELSTMVDMGRLRLLDVNDL"
     gene	     <2155..2402
		     /gene="rev"
     CDS	     <2155..2402
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGK82511.1"
		     /db_xref="GI:485450656"
		     /translation="PYPEPKGTRQARKNRRRRWRARQRQIHSISQRILVDCLGRSTEP
		     VPLQLPPIERLHIDCSEGSGTSGTQQSQGTAEGVGSP"
     gene	     <2155..2245
		     /gene="tat"
     CDS	     <2155..2245
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGK82510.1"
		     /db_xref="GI:485450655"
		     /translation="PLPRTQGDQTGSEESKKKVESKTETDPFD"
BASE COUNT	896 a	 457 c	  614 g    625 t
ORIGIN
       1 atgagagtga gggggatgct gaggaattat ccacaatggt ggatatgggg cgtcttaggc 
      61 ttttggatgt taatgatttg taatgggacg gggaaattgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaaaactact ctattctgtg catcagatgc tagagcattt 
     181 gacagagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgc ttttggaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaggatat aattagttta tgggaccaaa gcctaaagcc atgtgtaaag 
     361 ttgaccccac tctgtgtcac tttaagatgt gtaaatgtta ccagtaatgc cacccaaact 
     421 aataataccc aagttaatgc tacccatgat agtgccaaag agagagaaat gaaaaattgc 
     481 tctttcaatg caaccacaga gttaagagat aagaaaaagg aagtgcatgc cctgttttat 
     541 aaacttgata tagtaccact agataagaca aactctggtg agtatagatt aataaattgt 
     601 aatacctcaa ccataacaca agcttgtcca aaggtcactt ttgatccaat tcctatacat 
     661 tattgtgctc cagctggtta tgcgattcta aagtgcaata ataagacctt caatgggaca 
     721 ggaccatgta ctaatgtcag cacagtacaa tgtacacatg gaattaagcc agtggtatca 
     781 acccaactcc tgttaaatgg tagcctagca gaaggagaga taataattag atctaaaaat 
     841 atgacagaca attccaaaac aataatagta cattttaatg aatctgtaga gattgtatgt 
     901 ataaggcccg gcaataacac aagacaaagt ataaggatag gaccaggaca aacattctat 
     961 gcaacaggag acataatagg agacataaga caagcacatt gtaacattag taaagctaac 
    1021 tggactagaa ctttacaaag ggtaagtaga aaattaggag aatacttccc caatagaaca 
    1081 ataacattta catcatctgc aggaggggac ccagaaatta caacacatag ctttaattgc 
    1141 agaggagaat ttttctattg taatacatca gggctgttta atggtacata cccggctaat 
    1201 ggtacagaaa gtaactcaag ctcaccaatc acactcccat gcagaataaa acaaattata 
    1261 aacatgtggc aggaggtagg acgagcaatg tatgctcctc ccattgcagg aaatataaca 
    1321 tgtacatcaa atatcacggg attactcttg acacgtgatg gaggcacagg aaatggcaca 
    1381 gaatcaaata gcacagaaac attcagacct ggaggaggag atatgaggga caattggaga 
    1441 agtgaattat ataaatacaa agtggtagaa attaagccat tgggaatagc acccactacg 
    1501 gcaaaaagga gagtggtgga gagagaaaaa agagcagtag gaataggagc tgtgttcctt 
    1561 gggttcttgg gagcagcagg aagcactatg ggcgcggcgt caatcacgct gacggtacat 
    1621 gccagacaat tgttatctgg tatagtgcaa cagcaaagca atttgctgaa agctatagag 
    1681 gcgcaacaac atttgttgca actcacggtc tggggcatta agcagctcca ggcaagagtc 
    1741 ctggctatag aaagatacct gcaggatcaa cggctcctag ggatttgggg ctgctctgga 
    1801 aaactcatct gcaccactaa tgtgccttgg aactccagtt ggagtaatag atctgaacaa 
    1861 gatatttggg agaacatgac ctggatgcag tgggatagag aaattaataa ttacacaaac 
    1921 acaatatact tgttgcttga agaatcgcaa agccaacagg aaaagaatga aaaagattta 
    1981 ctagcattgg acaaatggaa cagcttgtgg aattggtttg acatatcaaa gtggctgtgg 
    2041 tatataaaaa tattcataat gatagtagga ggcttgatag gtttaagaat agtttttgct 
    2101 gtgctctcta tagcgaatag agttaggcag ggatactcac ctttgtcgtt tcagaccctt 
    2161 accccgaacc caaggggacc agacaggctc ggaagaatcg aagaagaagg tggagagcaa 
    2221 gacagagaca gatccattcg attagtcagc ggattcttgt cgattgcctg ggacgatcta 
    2281 cggagcctgt gcctcttcag ctaccaccga ttgagagact tcatattgat tgtagcgagg 
    2341 gcagtggaac ttctgggacg cagcagtctc aagggactgc agagggggtg ggaagccctt 
    2401 aagtatctgg gaaatcttgt gcagtattgg ggtctggaac taaagaagag tgctattagt 
    2461 ctgcttgata ccatagcaat agctgtagct gaaggaacag ataggattat agaattgata 
    2521 caaagaattt gtagagctat ccgcaacata cctagaagaa taagacaggg ctttgaaaca 
    2581 gctttgctat aa
//
last modified: Tue May 31 10:56 2022


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