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LOCUS	    KC628808		    1122 bp    RNA     linear	VRL 07-APR-2013
DEFINITION  HIV-1 isolate E_404_14R from Botswana envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   KC628808
VERSION     KC628808.1 GI:472826391
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1122)
            Show all sequences for reference 1
  AUTHORS   Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
  TITLE     Intra-host evolutionary rates in HIV-1C env and gag during primary
	    infection.
  JOURNAL   Infect Genet Evol. 2013 Mar 20. pii: S1567-1348(13)00077-4. doi:
	    10.1016/j.meegid.2013.02.023.
  PUBMED    23523818
REFERENCE   2 (bases 1 to 1122)
            Show all sequences for reference 2
  AUTHORS   Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2013) Immunology & Infectious Diseases, Harvard
	    School of Public Health; Botswana-Harvard AIDS Institute
	    Partnership, 651 Huntington Ave, Boston, MA 02115, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Novitsky,V., Moyo,S., Wang,R., Gaseitsiwe,S. and Essex,M.
  TITLE     Deciphering Multiplicity of HIV-1C Infection: Transmission of
	    Closely Related Multiple Viral Lineages.
  JOURNAL   PLoS. One.. 11(11); e0166746 (2016)
  PUBMED    27893822
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. 2.6 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1122
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="E_404_14R"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Botswana"
		     /collection_date="16-Feb-2007"
		     /note="subtype: C"
     gene	     <1..>1122
		     /gene="env"
     CDS	     <1..>1122
		     /gene="env"
		     /note="gp120 V1-C5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGI44816.1"
		     /db_xref="GI:472826392"
		     /translation="CSDATATNITMVNITNSIDKDMKNCSFNITTELRDKPQRMHALF
		     YRLDIEPLKENNNSSHSNFSNYILINCNTSAISQACPKISFDPIPIHYCAPAGYAILK
		     CNNKTFNGTGPCQNVSTVQCTHGIKPVVSTQLLLNGSLSEEGIIISSKNLTDNAQTII
		     VHLNESVEINCTRPGNNTRRSIRIGPGQAFYATGDIIGDIRQAHCNISKSKWNKTLQR
		     VEEKLKEYFNKTIVFKSPPPGGDPEITSHTFNCRGEFFYCNTSQLFNRTDGNITENNG
		     TITIPCRIKQFINMWQKVGQAIYAPPIAGNITCNSNITGLLLVRDGGKNSSNETFRPQ
		     GGNMKDNWRSELYKYKVVEIKPLGIAPTNARRRTVKREKR"
BASE COUNT	461 a	 194 c	  202 g    265 t
ORIGIN
       1 tgtagcgatg ctacagcaac taatataact atggtcaata ttactaatag tattgacaaa 
      61 gatatgaaaa attgctcttt caacataacc acagaactaa gagataaacc acagaggatg 
     121 catgcacttt tttatagact tgatatagaa ccacttaagg agaataacaa ctctagccat 
     181 agcaacttta gtaactatat attaataaat tgtaatacct cagccatatc acaagcctgt 
     241 ccaaagatct cttttgaccc aattcctata cattattgtg ctccagctgg ttatgcgatt 
     301 ctaaagtgta ataataagac attcaatgga acaggaccat gccagaatgt cagcacagta 
     361 caatgtacac atggaattaa gccagtggta tcaactcaac tactgctaaa tggtagccta 
     421 tcagaagaag ggataataat cagctctaaa aatctgacag acaatgccca aacaataata 
     481 gtacatctta atgaatctgt agaaattaac tgtacaagac caggcaataa tacaagaaga 
     541 agtataagga taggaccagg acaagcattc tatgcaacag gagatataat aggagacata 
     601 agacaagcac attgtaacat tagtaaatct aaatggaata aaactttaca aagggtagag 
     661 gaaaaattaa aagaatactt caataaaaca atagtgttta agtcaccacc cccaggaggg 
     721 gacccagaaa ttacatcaca tacctttaat tgtagaggag aatttttcta ttgcaataca 
     781 tcacaactgt ttaataggac tgatggaaat attacagaaa ataatggaac catcacaatc 
     841 ccatgcagaa taaaacaatt tataaacatg tggcagaagg taggacaagc aatatatgcc 
     901 cctcccattg caggaaacat aacatgtaac tcaaatatca caggactact attggtgcgt 
     961 gatggaggaa aaaatagcag taacgagaca ttcagacctc aaggaggaaa tatgaaggac 
    1021 aattggagaa gtgaattata taaatataaa gtggtagaaa tcaagccatt aggaatagca 
    1081 cccactaatg cacggaggag aacggtgaag agagaaaaaa ga
//
last modified: Tue May 31 10:56 2022


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