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LOCUS KC628802 1122 bp RNA linear VRL 07-APR-2013
DEFINITION HIV-1 isolate E_404_07R from Botswana envelope glycoprotein (env)
gene, partial cds
ACCESSION KC628802
VERSION KC628802.1 GI:472826379
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1122)
Show all sequences for reference 1
AUTHORS Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
TITLE Intra-host evolutionary rates in HIV-1C env and gag during primary
infection.
JOURNAL Infect Genet Evol. 2013 Mar 20. pii: S1567-1348(13)00077-4. doi:
10.1016/j.meegid.2013.02.023.
PUBMED 23523818
REFERENCE 2 (bases 1 to 1122)
Show all sequences for reference 2
AUTHORS Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2013) Immunology & Infectious Diseases, Harvard
School of Public Health; Botswana-Harvard AIDS Institute
Partnership, 651 Huntington Ave, Boston, MA 02115, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Novitsky,V., Moyo,S., Wang,R., Gaseitsiwe,S. and Essex,M.
TITLE Deciphering Multiplicity of HIV-1C Infection: Transmission of
Closely Related Multiple Viral Lineages.
JOURNAL PLoS. One.. 11(11); e0166746 (2016)
PUBMED 27893822
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. 2.6 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1122
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="E_404_07R"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Botswana"
/collection_date="16-Feb-2007"
/note="subtype: C"
gene <1..>1122
/gene="env"
CDS <1..>1122
/gene="env"
/note="gp120 V1-C5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGI44810.1"
/db_xref="GI:472826380"
/translation="CSDATATNITMANIINSIDKDMKNCSFNITTELRDKPQRMHALF
YRLDIKPLKENNNSSHSNFSNYILINCNTSAISQACPKISFDPIPIHYCAPAGYAILK
CNNKTFNGTGPCQNVSTVQCTHGIKPVVSTQLLLNGSLSEEGIIISSKNLTDNAQTII
VHLNESVEINCTRPGNNTRRSIRIGPGQAFYATGDIIGDIRQAHCNISESKWKKTLQR
VEEKLKEYFNKTIVFKSPPPGGDPEITSHTFNCRGEFFYCNTSQLFNRTDGNITENNG
TITIPCRIKQFINMWQKVGQAIYAPPIAGNITCNSNITGLLLVRDGGKNSSNETFRPQ
GGNMKDNWRSELYKYKVVEIKPLGIAPTNARRRTVKREKR"
BASE COUNT 462 a 194 c 202 g 264 t
ORIGIN
1 tgtagcgatg ctacagcaac taatataact atggccaata ttattaatag tattgacaaa
61 gatatgaaaa attgctcttt caacataacc acagaactaa gagataaacc acagaggatg
121 catgcacttt tttatagact tgatataaaa ccacttaagg agaataacaa ctctagccat
181 agcaacttta gtaactatat attaataaat tgtaatacct cagccatatc acaagcctgt
241 ccaaagatct cttttgaccc aattcctata cattattgtg ctccagctgg ttatgcgatt
301 ctaaagtgta ataataagac attcaatgga acaggaccat gccagaatgt cagcacagta
361 caatgtacac atggaattaa gccagtggta tcaactcaac tactgctaaa tggtagccta
421 tcagaagaag ggataataat cagctctaaa aatctgacag acaatgccca aacaataata
481 gtacatctta atgaatctgt agaaattaac tgtacaagac caggcaataa tacaagaaga
541 agtataagga taggaccagg acaagcattc tatgcaacag gagatataat aggagacata
601 agacaagcac attgtaacat tagtgaatct aaatggaaga aaactttaca aagggtagag
661 gaaaaattaa aagaatactt caataaaaca atagtgttta agtcaccacc cccaggaggg
721 gacccagaaa ttacatcaca tacctttaat tgtagaggag aatttttcta ttgcaataca
781 tcacaactgt ttaataggac tgatggaaat attacagaaa ataatggaac catcacaatc
841 ccatgcagaa taaaacaatt tataaacatg tggcaaaagg taggacaagc aatatatgcc
901 cctcccattg caggaaacat aacatgtaac tcaaatatca caggactact attggtgcgt
961 gatggaggaa aaaatagcag taacgagaca ttcagacctc aaggaggaaa tatgaaggac
1021 aattggagaa gtgaattata taaatataaa gtggtagaaa tcaagccatt aggaatagca
1081 cccactaatg cacggaggag aacggtgaag agagaaaaaa ga
//
last modified: Tue May 31 10:56 2022