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LOCUS KC628783 1086 bp RNA linear VRL 07-APR-2013
DEFINITION HIV-1 isolate C_201_08RNA from Botswana envelope glycoprotein (env)
gene, partial cds
ACCESSION KC628783
VERSION KC628783.1 GI:472826341
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1086)
Show all sequences for reference 1
AUTHORS Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
TITLE Intra-host evolutionary rates in HIV-1C env and gag during primary
infection.
JOURNAL Infect Genet Evol. 2013 Mar 20. pii: S1567-1348(13)00077-4. doi:
10.1016/j.meegid.2013.02.023.
PUBMED 23523818
REFERENCE 2 (bases 1 to 1086)
Show all sequences for reference 2
AUTHORS Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2013) Immunology & Infectious Diseases, Harvard
School of Public Health; Botswana-Harvard AIDS Institute
Partnership, 651 Huntington Ave, Boston, MA 02115, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Novitsky,V., Moyo,S., Wang,R., Gaseitsiwe,S. and Essex,M.
TITLE Deciphering Multiplicity of HIV-1C Infection: Transmission of
Closely Related Multiple Viral Lineages.
JOURNAL PLoS. One.. 11(11); e0166746 (2016)
PUBMED 27893822
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. 2.6 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1086
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="C_201_08RNA"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Botswana"
/collection_date="22-Jun-2006"
/note="subtype: C"
gene <1..>1086
/gene="env"
CDS <1..>1086
/gene="env"
/note="gp120 V1-C5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGI44791.1"
/db_xref="GI:472826342"
/translation="CSNVTVTHDDMKNCSFNVTTELRDKKKHEYALFYRLDIVPLTNN
KNSSEYRLINCNTSTITQSCPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVS
TVQCTHGIKPVVSTQLLLNGSLAEKDIVIRSKNITDNVRTIIVHLNESVEIVCTRPGN
NTRKSMRIGPGQTFYATGDIIGNIREAHCNISEEKWNETLSRVSKKLGKYFPNRTITF
NPPTGGDLEITTHSFNCRGEFFYCNTSKLFNGTYNQINSTGNTSDSNITLPCRIKQII
NMWQGVGRAMYAPPIAGNITCKSNITGLILTRDGGTNNTNEIFRPAGGDMRDNWRSEL
YKYKVVEVKPLGLAPTKAKRRVVEREKR"
BASE COUNT 440 a 171 c 204 g 271 t
ORIGIN
1 tgtagcaatg ttactgttac ccacgatgat atgaaaaatt gctctttcaa tgtaaccaca
61 gaactaagag ataagaaaaa gcatgaatat gctctttttt atagacttga tatagtacca
121 cttaccaata ataagaattc cagtgaatat agattaataa attgtaatac ctcaaccata
181 acacaatcct gtccaaaggt ctcttttgac ccaattccta tacattattg tgctccagct
241 ggttatgcga ttctgaagtg taataataag acattcaatg gaacaggacc atgtaataat
301 gtcagcactg tacaatgtac acatggaatt aagccagtgg tatcaactca actactgtta
361 aatggtagtc tagcagaaaa agatatagta attagatcta aaaatataac agataatgtc
421 agaacaataa tagtacatct taatgaatct gtagagattg tatgtacaag gcctggcaat
481 aatacaagga aaagtatgag gataggacca ggacaaacat tttatgcaac aggagacata
541 ataggaaata taagagaagc acattgtaac attagtgaag agaaatggaa tgaaacttta
601 agcagagtaa gtaaaaaatt aggaaaatac ttccctaata gaacaataac atttaatcca
661 cccacaggag gggacttaga aattacaaca catagcttta attgtagagg agaatttttc
721 tattgcaata catcaaagct gtttaatggc acatacaatc agattaacag tacaggaaat
781 acttcagatt caaacatcac actcccatgc agaataaaac aaattataaa catgtggcag
841 ggagtaggac gagcaatgta tgcccctccc attgcaggaa acataacatg taaatcaaat
901 atcacaggac taatattgac acgtgatgga ggaaccaata acactaatga gatattcagg
961 cctgcaggag gagatatgag ggacaattgg agaagtgaat tatataaata taaagtggta
1021 gaagttaagc cattaggact agcacccact aaggcaaaaa ggagagtggt ggagagagaa
1081 aaaaga
//
last modified: Tue May 31 10:56 2022