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LOCUS	    KC628783		    1086 bp    RNA     linear	VRL 07-APR-2013
DEFINITION  HIV-1 isolate C_201_08RNA from Botswana envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   KC628783
VERSION     KC628783.1 GI:472826341
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1086)
            Show all sequences for reference 1
  AUTHORS   Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
  TITLE     Intra-host evolutionary rates in HIV-1C env and gag during primary
	    infection.
  JOURNAL   Infect Genet Evol. 2013 Mar 20. pii: S1567-1348(13)00077-4. doi:
	    10.1016/j.meegid.2013.02.023.
  PUBMED    23523818
REFERENCE   2 (bases 1 to 1086)
            Show all sequences for reference 2
  AUTHORS   Novitsky,V., Wang,R., Rossenkhan,R., Moyo,S. and Essex,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2013) Immunology & Infectious Diseases, Harvard
	    School of Public Health; Botswana-Harvard AIDS Institute
	    Partnership, 651 Huntington Ave, Boston, MA 02115, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Novitsky,V., Moyo,S., Wang,R., Gaseitsiwe,S. and Essex,M.
  TITLE     Deciphering Multiplicity of HIV-1C Infection: Transmission of
	    Closely Related Multiple Viral Lineages.
  JOURNAL   PLoS. One.. 11(11); e0166746 (2016)
  PUBMED    27893822
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. 2.6 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1086
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="C_201_08RNA"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Botswana"
		     /collection_date="22-Jun-2006"
		     /note="subtype: C"
     gene	     <1..>1086
		     /gene="env"
     CDS	     <1..>1086
		     /gene="env"
		     /note="gp120 V1-C5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGI44791.1"
		     /db_xref="GI:472826342"
		     /translation="CSNVTVTHDDMKNCSFNVTTELRDKKKHEYALFYRLDIVPLTNN
		     KNSSEYRLINCNTSTITQSCPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVS
		     TVQCTHGIKPVVSTQLLLNGSLAEKDIVIRSKNITDNVRTIIVHLNESVEIVCTRPGN
		     NTRKSMRIGPGQTFYATGDIIGNIREAHCNISEEKWNETLSRVSKKLGKYFPNRTITF
		     NPPTGGDLEITTHSFNCRGEFFYCNTSKLFNGTYNQINSTGNTSDSNITLPCRIKQII
		     NMWQGVGRAMYAPPIAGNITCKSNITGLILTRDGGTNNTNEIFRPAGGDMRDNWRSEL
		     YKYKVVEVKPLGLAPTKAKRRVVEREKR"
BASE COUNT	440 a	 171 c	  204 g    271 t
ORIGIN
       1 tgtagcaatg ttactgttac ccacgatgat atgaaaaatt gctctttcaa tgtaaccaca 
      61 gaactaagag ataagaaaaa gcatgaatat gctctttttt atagacttga tatagtacca 
     121 cttaccaata ataagaattc cagtgaatat agattaataa attgtaatac ctcaaccata 
     181 acacaatcct gtccaaaggt ctcttttgac ccaattccta tacattattg tgctccagct 
     241 ggttatgcga ttctgaagtg taataataag acattcaatg gaacaggacc atgtaataat 
     301 gtcagcactg tacaatgtac acatggaatt aagccagtgg tatcaactca actactgtta 
     361 aatggtagtc tagcagaaaa agatatagta attagatcta aaaatataac agataatgtc 
     421 agaacaataa tagtacatct taatgaatct gtagagattg tatgtacaag gcctggcaat 
     481 aatacaagga aaagtatgag gataggacca ggacaaacat tttatgcaac aggagacata 
     541 ataggaaata taagagaagc acattgtaac attagtgaag agaaatggaa tgaaacttta 
     601 agcagagtaa gtaaaaaatt aggaaaatac ttccctaata gaacaataac atttaatcca 
     661 cccacaggag gggacttaga aattacaaca catagcttta attgtagagg agaatttttc 
     721 tattgcaata catcaaagct gtttaatggc acatacaatc agattaacag tacaggaaat 
     781 acttcagatt caaacatcac actcccatgc agaataaaac aaattataaa catgtggcag 
     841 ggagtaggac gagcaatgta tgcccctccc attgcaggaa acataacatg taaatcaaat 
     901 atcacaggac taatattgac acgtgatgga ggaaccaata acactaatga gatattcagg 
     961 cctgcaggag gagatatgag ggacaattgg agaagtgaat tatataaata taaagtggta 
    1021 gaagttaagc cattaggact agcacccact aaggcaaaaa ggagagtggt ggagagagaa 
    1081 aaaaga
//
last modified: Tue May 31 10:56 2022


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