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LOCUS	    KC247450		    2541 bp    RNA     linear	VRL 29-MAR-2013
DEFINITION  HIV-1 isolate 703010505_w14_31 from Malawi envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   KC247450
VERSION     KC247450.1 GI:453801722
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2541)
            Show all sequences for reference 1
  AUTHORS   Liao,H.-X., Lynch,R., Zhou,T., Gao,F., Alam,S.M., Boyd,S.D.,
	    Fire,A.Z., Roskin,K.M., Schramm,C.A., Zhang,Z., Zhu,J., Shapiro,L.,
	    Mullikin,J.C., Gnanakaran,S., Hraber,P., Wiehe,K., Kelsoe,G.,
	    Yang,G., Xia,S.-M., Montefiori,D.C., Parks,R., Lloyd,K.E.,
	    Scearce,R.M., Soderberg,K.A., Cohen,M., Kamanga,G., Louder,M.K.,
	    Tran,L.M., Chen,Y., Cai,F., Chen,S., Moquin,S., Du,X., Joyce,M.G.,
	    Srivatsan,S., Zhang,B., Zheng,A., Shaw,G.M., Hahn,B.H.,
	    Kepler,T.B., Korber,B.T.M., Kwong,P.D., Mascola,J.R. and
	    Haynes,B.F.
  TITLE     Co-evolution of a broadly neutralizing HIV-1 antibody and founder
	    virus.
  JOURNAL   Nature.. 496(7446); 469-76 (2013)
  PUBMED    23552890
REFERENCE   2 (bases 1 to 2541)
            Show all sequences for reference 2
  AUTHORS   Liao,H.-X., Lynch,R., Zhou,T., Gao,F., Munir Alam,S., Boyd,S.D.,
	    Fire,A.Z., Roskin,K.M., Schramm,C.A., Zhang,Z., Zhu,J., Shapiro,L.,
	    Mullikin,J.C., Gnanakaran,S., Hraber,P., Weihe,K., Kelsoe,G.,
	    Yang,G., Xia,S.-M., Montefiori,D.C., Parks,R., Lloyd,K.E.,
	    Scearce,R.M., Soderberg,K.D., Cohen,M., Kaminga,G., Louder,M.K.,
	    Tran,L.M., Chen,Y., Cai,F., Chen,S., Moquin,S., Du,X., Joyce,G.M.,
	    Srivatsan,S., Zhang,B., Zheng,A., Shaw,G.M., Hahn,B.H.,
	    Kepler,T.B., Korber,B.T., Kwong,P.D., Mascola,J.R. and Haynes,B.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2012) T-6 MS K710, Los Alamos National
	    Laboratory, PO Box 1663, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 703010505 Patient sex M
	    Fiebig stage NA Viral load 392372 CD4 count NA Sample timepoint 71
	    Culture method Uncultured Sample tissue Plasma HLA type A*3001/24
	    A*3002/33 B*4202 B*570301 C*1701/02/03 C*1801/02 Risk factor SH
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2541
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="703010505_w14_31"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     1..2541
		     /gene="env"
     CDS	     1..2541
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGG24485.1"
		     /db_xref="GI:453801726"
		     /translation="MRVMGIQRNYPQWWIWSMLGFWMLMICNGMWVTVYYGVPVWKEA
		     KTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLKNVTENFNMWKNDMVDQMHE
		     DVISLWDQSLKPCVKLTPLCVTLNCTNATASNSSIIEGMKNCSFNITTELRDKREKKN
		     ALFYKLDIVQLDGNSSQYRLINCNTSVITQACPKVSFDPIPIHYCAPAGYAILKCNNK
		     TFTGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENITNNVKTIIVHLN
		     ESVKIECTRPNNKTRTSIRIGPGQAFYATGQVIGDIREAYCNINESKWNETLQRVSKK
		     LKEYFPHKNITFQPSSGGDLEITTHSFNCGGEFFYCNTSSLFNRTYMANSTDMANSTE
		     TNSTRTIKIHCRIKQIINMWQEVGRAMYAPPIAGNITCISNITGLLLTRDGGKNNTET
		     FRPGGGNMKDNWRSELYKYKVVEVKPLGVAPTNARRRVVEREKRAVGMGAVFLGFLGA
		     AGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHMLKLTVWGIKQLQARVLAL
		     ERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYGDIWDNMTWMQWEREISNYTEI
		     IYELLEESQNQQEKNEQDLLALDRWNSLWNWFNITNWLWYIKIFIMIVGGLIGLRIIF
		     AVLSLVNRVRQGYSPLSLQTLIPSPRGPDRPGGIEEEGGEQDRNRSTRLVSGFLALVW
		     DDLRSLCLFIYHRLRDFILIAARAGELLGRSSLKGLRRGWEALKYLGSLVQYWGLELK
		     RSAISLLDTLAIAVGEGTDRILEFVLGICRAIRNIPTRIRQGFETALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AGG24484.1"
		     /db_xref="GI:453801725"
		     /translation="ESDGDTEELSTMVDMEHVRLLDANDL"
     gene	     <2104..2351
		     /gene="rev"
     CDS	     <2104..2351
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGG24483.1"
		     /db_xref="GI:453801724"
		     /translation="PYPKPEGTRQARRNRRRRWRARQKQINAISERILSACLGRPAEP
		     VPFHLPPIERLHINCSESGGTSGTQQSQGTTERMGSP"
     gene	     <2104..2194
		     /gene="tat"
     CDS	     <2104..2194
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGG24482.1"
		     /db_xref="GI:453801723"
		     /translation="PLSQARGDQTGPEESKKKVESKTETDQRD"
BASE COUNT	909 a	 417 c	  593 g    622 t
ORIGIN
       1 atgagagtga tggggataca gaggaattat ccacaatggt ggatatggag catgttaggc 
      61 ttttggatgc taatgatttg taatgggatg tgggtcacag tctactatgg ggtacctgtg 
     121 tggaaagaag caaaaactac tctattttgt gcatcagatg ctaaagcata tgagaaagaa 
     181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaatcc acaagaaatg 
     241 gttttaaaaa atgtaacaga aaatttcaac atgtggaaaa atgacatggt ggatcagatg 
     301 catgaagatg taattagttt atgggatcaa agcctcaagc catgtgtaaa gttgacccca 
     361 ctctgtgtca ctctaaactg taccaatgct actgccagca atagcagtat aatagaggga 
     421 atgaaaaatt gctctttcaa tataaccaca gaattaagag ataagagaga gaaaaagaat 
     481 gcactttttt ataaacttga tatagtacaa ctagatggca actctagtca gtatagatta 
     541 ataaattgta atacctcagt cataacacaa gcctgtccaa aggtctcttt tgacccaatt 
     601 cctatacatt attgtgctcc agctggttat gcgattctaa agtgtaataa taagacattc 
     661 actggaacag gaccgtgtaa taatgtcagc acagtacaat gtacacatgg aattaagcca 
     721 gtggtttcaa ctcaactatt gttaaatggt agcctagcag aaggagagat aataattaga 
     781 tctgaaaata taacaaacaa tgtcaaaaca ataatagtac atctcaatga atctgtaaag 
     841 attgagtgta cgagacccaa taataaaaca agaacaagta taagaatagg accaggacaa 
     901 gcattttatg caacaggaca agtaatagga gacataagag aagcatattg taacattaat 
     961 gaaagtaaat ggaatgaaac tttacaaagg gtaagtaaaa aattaaaaga atacttccct 
    1021 cataagaata taacatttca accatcctca ggaggggacc tagaaattac aacacatagc 
    1081 tttaattgtg gaggagaatt tttctattgc aatacatcaa gcctgtttaa taggacatat 
    1141 atggctaata gtacagatat ggctaatagt acagaaacta acagtacacg aaccatcaaa 
    1201 atccactgca gaataaaaca aattataaac atgtggcagg aggtgggacg agcaatgtat 
    1261 gcccctccca ttgcaggaaa cataacatgt atatcaaata tcacaggact actattgaca 
    1321 agggatggag gaaaaaacaa tacggagaca ttcagacctg gaggaggaaa tatgaaggac 
    1381 aattggagaa gtgaattata taaatataaa gtggtagaag ttaagccatt aggagtagca 
    1441 cccactaatg caagaaggag agtggtggag agagaaaaaa gagcagtggg aatgggagct 
    1501 gtgttccttg ggttcttggg agcggcagga agcactatgg gcgcagcatc aataacgctg 
    1561 acggtacagg ccagacaatt attgtctggt atagtgcaac agcaaagcaa tttgctgaag 
    1621 gctatagagg ctcaacagca tatgttgaaa ctcacggtct ggggcattaa acagctccag 
    1681 gcaagagtcc tggccttgga aagataccta aaggatcaac agctcctagg gatgtggggc 
    1741 tgctctggaa aactcatctg caccactaat gtatattgga actctagttg gagtaataaa 
    1801 acttatggtg atatttggga taacatgacc tggatgcagt gggagagaga aattagcaat 
    1861 tatacagaaa taatatatga attgcttgaa gaatcacaaa accagcagga aaagaatgaa 
    1921 caagatttac tagcattgga cagatggaac agtctgtgga attggtttaa cataacaaat 
    1981 tggctgtggt atataaaaat attcataatg atagtaggag gcttgatagg tttaagaata 
    2041 atttttgctg tgctttcttt agtaaataga gttaggcagg gatactcacc tctgtcgttg 
    2101 cagaccctta tcccaagccc gaggggacca gacaggcccg gaggaatcga agaagaaggt 
    2161 ggagagcaag acagaaacag atcaacgcga ttagtgagcg gattcttagc gcttgtctgg 
    2221 gacgacctgc ggagcctgtg ccttttcatc taccaccgat tgagagactt catattaatt 
    2281 gcagcgagag cgggggaact tctgggacgc agcagtctca agggactacg gagaggatgg 
    2341 gaagccctta agtatctggg aagtcttgtg cagtattggg gcctggaact aaaaaggagt 
    2401 gctattagtc tattggatac cctagcaata gcagtaggtg aaggaacaga taggattcta 
    2461 gaatttgtat taggaatttg tagagctatc cgcaacatac ctacaagaat aagacagggc 
    2521 tttgaaacag ctttgctata a
//
last modified: Tue May 31 10:56 2022


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