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LOCUS KC247450 2541 bp RNA linear VRL 29-MAR-2013
DEFINITION HIV-1 isolate 703010505_w14_31 from Malawi envelope glycoprotein
(env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
and tat protein (tat) genes, partial cds
ACCESSION KC247450
VERSION KC247450.1 GI:453801722
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2541)
Show all sequences for reference 1
AUTHORS Liao,H.-X., Lynch,R., Zhou,T., Gao,F., Alam,S.M., Boyd,S.D.,
Fire,A.Z., Roskin,K.M., Schramm,C.A., Zhang,Z., Zhu,J., Shapiro,L.,
Mullikin,J.C., Gnanakaran,S., Hraber,P., Wiehe,K., Kelsoe,G.,
Yang,G., Xia,S.-M., Montefiori,D.C., Parks,R., Lloyd,K.E.,
Scearce,R.M., Soderberg,K.A., Cohen,M., Kamanga,G., Louder,M.K.,
Tran,L.M., Chen,Y., Cai,F., Chen,S., Moquin,S., Du,X., Joyce,M.G.,
Srivatsan,S., Zhang,B., Zheng,A., Shaw,G.M., Hahn,B.H.,
Kepler,T.B., Korber,B.T.M., Kwong,P.D., Mascola,J.R. and
Haynes,B.F.
TITLE Co-evolution of a broadly neutralizing HIV-1 antibody and founder
virus.
JOURNAL Nature.. 496(7446); 469-76 (2013)
PUBMED 23552890
REFERENCE 2 (bases 1 to 2541)
Show all sequences for reference 2
AUTHORS Liao,H.-X., Lynch,R., Zhou,T., Gao,F., Munir Alam,S., Boyd,S.D.,
Fire,A.Z., Roskin,K.M., Schramm,C.A., Zhang,Z., Zhu,J., Shapiro,L.,
Mullikin,J.C., Gnanakaran,S., Hraber,P., Weihe,K., Kelsoe,G.,
Yang,G., Xia,S.-M., Montefiori,D.C., Parks,R., Lloyd,K.E.,
Scearce,R.M., Soderberg,K.D., Cohen,M., Kaminga,G., Louder,M.K.,
Tran,L.M., Chen,Y., Cai,F., Chen,S., Moquin,S., Du,X., Joyce,G.M.,
Srivatsan,S., Zhang,B., Zheng,A., Shaw,G.M., Hahn,B.H.,
Kepler,T.B., Korber,B.T., Kwong,P.D., Mascola,J.R. and Haynes,B.F.
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2012) T-6 MS K710, Los Alamos National
Laboratory, PO Box 1663, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 703010505 Patient sex M
Fiebig stage NA Viral load 392372 CD4 count NA Sample timepoint 71
Culture method Uncultured Sample tissue Plasma HLA type A*3001/24
A*3002/33 B*4202 B*570301 C*1701/02/03 C*1801/02 Risk factor SH
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2541
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="703010505_w14_31"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="2008"
/note="subtype: C"
gene 1..2541
/gene="env"
CDS 1..2541
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGG24485.1"
/db_xref="GI:453801726"
/translation="MRVMGIQRNYPQWWIWSMLGFWMLMICNGMWVTVYYGVPVWKEA
KTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLKNVTENFNMWKNDMVDQMHE
DVISLWDQSLKPCVKLTPLCVTLNCTNATASNSSIIEGMKNCSFNITTELRDKREKKN
ALFYKLDIVQLDGNSSQYRLINCNTSVITQACPKVSFDPIPIHYCAPAGYAILKCNNK
TFTGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENITNNVKTIIVHLN
ESVKIECTRPNNKTRTSIRIGPGQAFYATGQVIGDIREAYCNINESKWNETLQRVSKK
LKEYFPHKNITFQPSSGGDLEITTHSFNCGGEFFYCNTSSLFNRTYMANSTDMANSTE
TNSTRTIKIHCRIKQIINMWQEVGRAMYAPPIAGNITCISNITGLLLTRDGGKNNTET
FRPGGGNMKDNWRSELYKYKVVEVKPLGVAPTNARRRVVEREKRAVGMGAVFLGFLGA
AGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHMLKLTVWGIKQLQARVLAL
ERYLKDQQLLGMWGCSGKLICTTNVYWNSSWSNKTYGDIWDNMTWMQWEREISNYTEI
IYELLEESQNQQEKNEQDLLALDRWNSLWNWFNITNWLWYIKIFIMIVGGLIGLRIIF
AVLSLVNRVRQGYSPLSLQTLIPSPRGPDRPGGIEEEGGEQDRNRSTRLVSGFLALVW
DDLRSLCLFIYHRLRDFILIAARAGELLGRSSLKGLRRGWEALKYLGSLVQYWGLELK
RSAISLLDTLAIAVGEGTDRILEFVLGICRAIRNIPTRIRQGFETALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AGG24484.1"
/db_xref="GI:453801725"
/translation="ESDGDTEELSTMVDMEHVRLLDANDL"
gene <2104..2351
/gene="rev"
CDS <2104..2351
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AGG24483.1"
/db_xref="GI:453801724"
/translation="PYPKPEGTRQARRNRRRRWRARQKQINAISERILSACLGRPAEP
VPFHLPPIERLHINCSESGGTSGTQQSQGTTERMGSP"
gene <2104..2194
/gene="tat"
CDS <2104..2194
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AGG24482.1"
/db_xref="GI:453801723"
/translation="PLSQARGDQTGPEESKKKVESKTETDQRD"
BASE COUNT 909 a 417 c 593 g 622 t
ORIGIN
1 atgagagtga tggggataca gaggaattat ccacaatggt ggatatggag catgttaggc
61 ttttggatgc taatgatttg taatgggatg tgggtcacag tctactatgg ggtacctgtg
121 tggaaagaag caaaaactac tctattttgt gcatcagatg ctaaagcata tgagaaagaa
181 gtgcataatg tctgggctac acatgcctgt gtacccacag accccaatcc acaagaaatg
241 gttttaaaaa atgtaacaga aaatttcaac atgtggaaaa atgacatggt ggatcagatg
301 catgaagatg taattagttt atgggatcaa agcctcaagc catgtgtaaa gttgacccca
361 ctctgtgtca ctctaaactg taccaatgct actgccagca atagcagtat aatagaggga
421 atgaaaaatt gctctttcaa tataaccaca gaattaagag ataagagaga gaaaaagaat
481 gcactttttt ataaacttga tatagtacaa ctagatggca actctagtca gtatagatta
541 ataaattgta atacctcagt cataacacaa gcctgtccaa aggtctcttt tgacccaatt
601 cctatacatt attgtgctcc agctggttat gcgattctaa agtgtaataa taagacattc
661 actggaacag gaccgtgtaa taatgtcagc acagtacaat gtacacatgg aattaagcca
721 gtggtttcaa ctcaactatt gttaaatggt agcctagcag aaggagagat aataattaga
781 tctgaaaata taacaaacaa tgtcaaaaca ataatagtac atctcaatga atctgtaaag
841 attgagtgta cgagacccaa taataaaaca agaacaagta taagaatagg accaggacaa
901 gcattttatg caacaggaca agtaatagga gacataagag aagcatattg taacattaat
961 gaaagtaaat ggaatgaaac tttacaaagg gtaagtaaaa aattaaaaga atacttccct
1021 cataagaata taacatttca accatcctca ggaggggacc tagaaattac aacacatagc
1081 tttaattgtg gaggagaatt tttctattgc aatacatcaa gcctgtttaa taggacatat
1141 atggctaata gtacagatat ggctaatagt acagaaacta acagtacacg aaccatcaaa
1201 atccactgca gaataaaaca aattataaac atgtggcagg aggtgggacg agcaatgtat
1261 gcccctccca ttgcaggaaa cataacatgt atatcaaata tcacaggact actattgaca
1321 agggatggag gaaaaaacaa tacggagaca ttcagacctg gaggaggaaa tatgaaggac
1381 aattggagaa gtgaattata taaatataaa gtggtagaag ttaagccatt aggagtagca
1441 cccactaatg caagaaggag agtggtggag agagaaaaaa gagcagtggg aatgggagct
1501 gtgttccttg ggttcttggg agcggcagga agcactatgg gcgcagcatc aataacgctg
1561 acggtacagg ccagacaatt attgtctggt atagtgcaac agcaaagcaa tttgctgaag
1621 gctatagagg ctcaacagca tatgttgaaa ctcacggtct ggggcattaa acagctccag
1681 gcaagagtcc tggccttgga aagataccta aaggatcaac agctcctagg gatgtggggc
1741 tgctctggaa aactcatctg caccactaat gtatattgga actctagttg gagtaataaa
1801 acttatggtg atatttggga taacatgacc tggatgcagt gggagagaga aattagcaat
1861 tatacagaaa taatatatga attgcttgaa gaatcacaaa accagcagga aaagaatgaa
1921 caagatttac tagcattgga cagatggaac agtctgtgga attggtttaa cataacaaat
1981 tggctgtggt atataaaaat attcataatg atagtaggag gcttgatagg tttaagaata
2041 atttttgctg tgctttcttt agtaaataga gttaggcagg gatactcacc tctgtcgttg
2101 cagaccctta tcccaagccc gaggggacca gacaggcccg gaggaatcga agaagaaggt
2161 ggagagcaag acagaaacag atcaacgcga ttagtgagcg gattcttagc gcttgtctgg
2221 gacgacctgc ggagcctgtg ccttttcatc taccaccgat tgagagactt catattaatt
2281 gcagcgagag cgggggaact tctgggacgc agcagtctca agggactacg gagaggatgg
2341 gaagccctta agtatctggg aagtcttgtg cagtattggg gcctggaact aaaaaggagt
2401 gctattagtc tattggatac cctagcaata gcagtaggtg aaggaacaga taggattcta
2461 gaatttgtat taggaatttg tagagctatc cgcaacatac ctacaagaat aagacagggc
2521 tttgaaacag ctttgctata a
//
last modified: Tue May 31 10:56 2022