HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    KC204788		    1302 bp    RNA     linear	VRL 30-MAR-2013
DEFINITION  HIV-1 isolate Patient26 from Botswana pol protein (pol) gene,
	    partial cds
ACCESSION   KC204788
VERSION     KC204788.1 GI:470271458
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
	    Iketleng,T., Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S.,
	    Mmalane,M., Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
  TITLE     No Clinically Significant Drug Resistance Mutations In HIV-1
	    subtype C Infected Women After Discontinuation Of NRTI-Based Or
	    PI-Based HAART For PMTCT In Botswana.
  JOURNAL   J Acquir Immune Defic Syndr. 2013 Mar 28.
  PUBMED    23542639
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
	    Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S., Mmalane,M.,
	    Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2012) Botswana-Harvard AIDS Institute Partnership
	    for HIV Research and Education, Gaborone, Botswana
COMMENT     ##Assembly-Data-START## Assembly Method Viroseq v. 2.8 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Patient26"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Botswana"
		     /collection_date="2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGI04274.1"
		     /db_xref="GI:470271459"
		     /translation="PQITLWQRPLVTIKVGGQTREALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKVIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LNESFRKYTALTIPSINNETPGIRFQYNGLPQGWKGSPAIFQSSMTKILEPFRRKNPD
		     IVIYQYMDDLYVGSDLEIMQHRVKIEELREHLLRWGFTTPDKKHQKESPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVTQLCKLLRGAKGLTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAALQQRCQH"
BASE COUNT	518 a	 208 c	  275 g    301 t
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gttacaataa aagtaggggg acagacaagg 
      61 gaagctcttt tagatacagg agcagatgat acagtattag aagagataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 caaatactta tagaaatttg tgggaaaaag gttataggta cagtattagt aggaccaaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattga cagcaatttg tgaagaaatg 
     421 gaaaaggaag gaaaaatcac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaacttaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcacccagc agggttaaaa 
     601 aagaaaaagt cagtgacagt actggatgtg ggggatgcat atttttcagt tcccttaaat 
     661 gaaagcttca ggaaatatac tgcattaacc atacctagta taaataatga aacaccaggg 
     721 attagatttc aatataatgg gcttccccag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcccttt agaagaaaaa acccagacat agtcatctat 
     841 caatatatgg atgatttata tgtaggatct gatttagaga taatgcaaca tagagtaaaa 
     901 atagaggagt taagagaaca cctattgaga tggggattta ccacaccaga caagaaacat 
     961 cagaaagaat ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agttgccaga aaaggatagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccaggaatta aagtaactca attgtgtaaa 
    1141 ctccttaggg gagccaaagg actaacagat atagtcccac tgactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagact tgatagcagc actacagcaa agatgtcaac ac
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health