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LOCUS KC204788 1302 bp RNA linear VRL 30-MAR-2013
DEFINITION HIV-1 isolate Patient26 from Botswana pol protein (pol) gene,
partial cds
ACCESSION KC204788
VERSION KC204788.1 GI:470271458
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
Iketleng,T., Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S.,
Mmalane,M., Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
TITLE No Clinically Significant Drug Resistance Mutations In HIV-1
subtype C Infected Women After Discontinuation Of NRTI-Based Or
PI-Based HAART For PMTCT In Botswana.
JOURNAL J Acquir Immune Defic Syndr. 2013 Mar 28.
PUBMED 23542639
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Souda,S., Gaseitsiwe,S., Georgette,N., Powis,K., Moremedi,D.,
Leidner,J., Moffat,C., Ogwu,A., Lockman,S., Moyo,S., Mmalane,M.,
Musonda,R., Makhema,J., Essex,M. and Shapiro,R.
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2012) Botswana-Harvard AIDS Institute Partnership
for HIV Research and Education, Gaborone, Botswana
COMMENT ##Assembly-Data-START## Assembly Method Viroseq v. 2.8 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Patient26"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Botswana"
/collection_date="2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGI04274.1"
/db_xref="GI:470271459"
/translation="PQITLWQRPLVTIKVGGQTREALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKVIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LNESFRKYTALTIPSINNETPGIRFQYNGLPQGWKGSPAIFQSSMTKILEPFRRKNPD
IVIYQYMDDLYVGSDLEIMQHRVKIEELREHLLRWGFTTPDKKHQKESPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVTQLCKLLRGAKGLTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAALQQRCQH"
BASE COUNT 518 a 208 c 275 g 301 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gttacaataa aagtaggggg acagacaagg
61 gaagctcttt tagatacagg agcagatgat acagtattag aagagataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acaatatgat
181 caaatactta tagaaatttg tgggaaaaag gttataggta cagtattagt aggaccaaca
241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattga cagcaatttg tgaagaaatg
421 gaaaaggaag gaaaaatcac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaacttaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcacccagc agggttaaaa
601 aagaaaaagt cagtgacagt actggatgtg ggggatgcat atttttcagt tcccttaaat
661 gaaagcttca ggaaatatac tgcattaacc atacctagta taaataatga aacaccaggg
721 attagatttc aatataatgg gcttccccag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcccttt agaagaaaaa acccagacat agtcatctat
841 caatatatgg atgatttata tgtaggatct gatttagaga taatgcaaca tagagtaaaa
901 atagaggagt taagagaaca cctattgaga tggggattta ccacaccaga caagaaacat
961 cagaaagaat ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agttgccaga aaaggatagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccaggaatta aagtaactca attgtgtaaa
1141 ctccttaggg gagccaaagg actaacagat atagtcccac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagact tgatagcagc actacagcaa agatgtcaac ac
//
last modified: Tue May 31 10:56 2022