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LOCUS KC203149 690 bp RNA linear VRL 19-FEB-2013
DEFINITION HIV-1 isolate 2011.ANHUI.AQg24 from China gag protein (gag) gene,
partial cds
ACCESSION KC203149
VERSION KC203149.1 GI:451317278
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 690)
Show all sequences for reference 1
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R. and Su,B.
TITLE New Emerging Recombinant HIV-1 Strains and Close Transmission
Linkage of HIV-1 Strains in the Chinese MSM Population Indicate a
New Epidemic Risk
JOURNAL PLoS ONE 8 (1), E54322 (2013)
PUBMED 23372706
REFERENCE 2 (bases 1 to 690)
Show all sequences for reference 2
AUTHORS Wu,J., Meng,Z., Xu,J., Lei,Y., Jin,L., Zhong,P., Han,R., Hna,R. and
Su,B.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2012) Anhui Provincial Center for Disease Control
and Prevention, Hefei, Anhui 230032, China
COMMENT ##Assembly-Data-START## Assembly Method Seuqncher v. 5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..690
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2011.ANHUI.AQg24"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="2011"
/note="genotype: CRF01_AE"
gene <1..>690
/gene="gag"
CDS <1..>690
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AGF35391.1"
/db_xref="GI:451317279"
/translation="ASVLSGGKLDAWEKIRLRPGGKKKYKLKHLVWASRELERFALNP
GLLESAXGCQQIIEQLQSTLKTGSEELKSLYNTVATLWCVHQGIXIXDTKXALDKIEE
XQNKSQQKTQQAAXSTGSSSKVSQNYPIVQNAQGQMVHQPISPRTLNAWVKVVEEKGF
NPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKETINEEAADWDRTHPVHAGP
IPPGQIREPRG"
BASE COUNT 272 a 123 c 161 g 127 t 7 other
ORIGIN
1 agcgtcagta ttaagtgggg gaaaattaga tgcatgggaa aaaattcggt taaggccagg
61 gggaaagaaa aaatataagc taaaacattt agtatgggca agcagggagt tggaaagatt
121 cgcacttaac cctggcctgt tagaatcagc araaggatgt caacaaataa tagaacagtt
181 acaatcaact ctcaagacag gatcagaaga acttaaatca ttatataata cagtagcaac
241 cctttggtgt gtacaccaag ggataragat aamagacacc aaggmagctt tagataaaat
301 agaggaagya caaaataaga gccagcaaaa gacacagcag gcagcagyta gcacaggaag
361 cagcagcaaa gtcagccaaa attaccctat agtgcaaaat gcacaagggc aaatggtaca
421 tcagcctata tcwcctagaa ctttaaatgc atgggtaaaa gtagtagaag aaaagggttt
481 taacccagaa gtaataccca tgttctcagc attatcagag ggagccaccc cacaagattt
541 aaatatgatg ctaaatatag tggggggaca ccaggcagca atgcaaatgt taaaagaaac
601 catcaatgaa gaagctgcag attgggatag gacacaccca gtacatgcag ggcctattcc
661 accaggccag ataagggaac caaggggaag
//
last modified: Tue May 31 10:56 2022