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LOCUS	    JX972236		    2544 bp    RNA     linear	VRL 16-MAR-2013
DEFINITION  HIV-1 isolate B.700010058.w24.154dps.3_C4 from USA envelope
	    glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev
	    protein (rev), and tat protein (tat) genes, partial cds
ACCESSION   JX972236
VERSION     JX972236.1 GI:459963311
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2544)
            Show all sequences for reference 1
  AUTHORS   Liu,M.K., Hawkins,N., Ritchie,A.J., Ganusov,V.V., Whale,V.,
	    Brackenridge,S., Li,H., Pavlicek,J.W., Cai,F., Rose-Abrahams,M.,
	    Treurnicht,F., Hraber,P., Riou,C., Gray,C., Ferrari,G., Tanner,R.,
	    Ping,L.H., Anderson,J.A., Swanstrom,R., B,C.C., Cohen,M.,
	    Karim,S.S., Haynes,B., Borrow,P., Perelson,A.S., Shaw,G.M.,
	    Hahn,B.H., Williamson,C., Korber,B.T., Gao,F., Self,S.,
	    McMichael,A. and Goonetilleke,N.
  TITLE     Vertical T cell immunodominance and epitope entropy determine HIV-1
	    escape
  JOURNAL   J. Clin. Invest. 123 (1), 380-393 (2013)
  PUBMED    23221345
REFERENCE   2 (bases 1 to 2544)
            Show all sequences for reference 2
  AUTHORS   Liu,M., Liu,M.K., Hawkins,N., Ritchie,A., Ritchie,A.J.,
	    Ganusov,V.V., Ganusov,V., Whale,V., Brackenridge,S., Li,H.,
	    Pavliceck,J., Pavlicek,J.W., Cai,F., Abrahams,M.-R., Treurnicht,F.,
	    Hraber,P., Hraber,P.T., Riou,C., Gray,C., Ferrari,G., Tanner,R.,
	    Ping,L.-H., Anderson,J.A., Anderson,J., Swanstrom,R., Cohen,M.S.,
	    Cohen,M., Abdool Karim,S., Abdool Karim,S.S., Haynes,B.,
	    Haynes,B.F., Borrow,P., Perelson,A., Shaw,G., Hahn,B., Hahn,B.H.,
	    Williamson,C., Korber,B., Korber,B.T., Gao,F., Self,S.,
	    McMichael,A., McMichael,A.J. and Goonetilleke,N.
  CONSRTM   CHAVI Core B
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2012) T6 MS K710, LANL, PO Box 1663, Los Alamos,
	    NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 700010058 Days
	    post-screening 154 Sample timepoint w24 Patient sex M Fiebig Stage
	    x Viral Load 205 CD4 count 830 HLA type A*0101 A*2301 B*1402 B*5701
	    Cw*0701 Cw*0802 Infection date 2006 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2544
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="B.700010058.w24.154dps.3_C4"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2007"
		     /note="subtype: B"
     gene	     1..2544
		     /gene="env"
     CDS	     1..2544
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGG91882.1"
		     /db_xref="GI:459963315"
		     /translation="MRVTGIKKNYQNLWKWGIMLLGMLMIYSTAEQLWVTVYYGVPVW
		     REATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIILANVTENFNMWENNMVDQ
		     MHEDIISLWDQSLKPCVQLTPLCVTLNCTELNNNSTTTTNSSEGKEMKNCSFNIPTSM
		     QDKTKKEYALFYKLDIVKIDDSNNSTNNSTYRLISCNTSVVTQACPKVSFQPIPIHYC
		     APAGFAILKCNNKAFNGTGQCTNVSTVQCTHGIRPVVSTQLLLNGSLAEKDIVLRSAN
		     FTNNAKTIIVQLNESVIINCTRPNNNTRKSITIGPGRAFYATGDIIGDIRQAHCNLSR
		     EQWDNTLKKIVTKLREQFNKTIIFKSPSGGDPEIVQHTFNCGGEFFYCDTKQLFNSTW
		     NATKANGTTGNDTIILPCRIKQIINMWQKVGKAMYAPPIKGKISCSSNITGLLLTRDG
		     GGGGQNETFRPAGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRGVGIGA
		     MVLGFLGAAGSTMGAASMMLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQ
		     LQARVLALERYLSDQQLLGIWGCSGKLICPTAVPWNASWSNKSYSEIWNNMTWIEWER
		     EIDNYTGEIYRLIEESQNQQERNEKDLLELDKWASLWNWFDISKWLWYIKIFIMIVGG
		     IVGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAARGPDRPEGIEEDGGERDRDRSNRLA
		     GGFLALIWVDLRNLCLFLYHRLRDLLLVLTRTVELLGRRGWEALKYWWNLLQYWSQEL
		     KNSAVSLLNAIAIAVAEGTDRIIEVLQRFIRTVLHIPTRIRQGLERALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AGG91881.1"
		     /db_xref="GI:459963314"
		     /translation="ESDGDQEELSKLMEMGHHAPWDVNDL"
     gene	     <2128..2402
		     /gene="rev"
     CDS	     <2128..2402
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGG91880.1"
		     /db_xref="GI:459963313"
		     /translation="PPPSSEGTRQARRNRRRRWRERQRQIQQISGWILSTYLGRSAEP
		     VPLPLPPLERLTLGSNEDCGTSGSQGVGSPQVLVESPAVLESGTKE"
     gene	     <2128..2218
		     /gene="tat"
     CDS	     <2128..2218
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGG91879.1"
		     /db_xref="GI:459963312"
		     /translation="PASQQRGDQTGPKESKKTVERETETDPTD"
BASE COUNT	892 a	 449 c	  592 g    611 t
ORIGIN
       1 atgagagtga cggggatcaa gaagaattat caaaacttat ggaaatgggg catcatgctc 
      61 cttgggatgt taatgatcta tagtacagca gaacaattgt gggtcacagt ctattatggg 
     121 gtgcctgtgt ggagagaagc aactaccacc ctattttgtg catcagatgc taaagcatat 
     181 gatacagagg tgcataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaataa tattggcaaa tgtgacagaa aattttaaca tgtgggaaaa taacatggta 
     301 gaccaaatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtacaa 
     361 ttaaccccac tctgtgtcac tttaaattgc actgagttga ataataatag taccactacc 
     421 actaatagta gcgagggaaa ggaaatgaag aactgttctt tcaacatccc cacaagcatg 
     481 caggataaga cgaagaaaga atatgcactc ttttataaac ttgatatagt aaaaatagat 
     541 gatagtaata atagtaccaa taatagtacc tataggttga taagttgtaa cacctcagtc 
     601 gttacacagg cctgtccaaa ggtatctttt cagccaattc ctatacatta ttgtgccccg 
     661 gctggttttg cgattctaaa gtgtaataat aaggctttca atggaacagg acaatgtaca 
     721 aatgtcagca cagtgcaatg cacacatgga attaggccag tagtatcaac tcaactgctg 
     781 ttaaatggca gtctagcaga aaaagatata gtacttaggt ctgccaattt cacaaacaat 
     841 gctaaaacca taatagtaca gctgaatgaa tctgtaataa ttaattgtac aagacccaac 
     901 aacaatacaa gaaaaagtat aactatagga ccagggagag cattttatgc aacaggagat 
     961 ataataggag acataagaca agcacattgt aaccttagta gagaacaatg ggataacact 
    1021 ttaaagaaga tagttacaaa attaagagaa cagtttaata aaacaataat ctttaagtcc 
    1081 ccctcaggag gggacccaga aattgtacag cacactttta attgtggagg ggaatttttc 
    1141 tactgtgata caaaacaact gtttaatagt acttggaatg ctactaaggc aaatggcact 
    1201 acaggaaatg acacaatcat actcccatgc agaataaagc aaattataaa catgtggcag 
    1261 aaagtaggaa aagcaatgta tgcccctccc atcaaaggaa aaattagttg ctcatcaaat 
    1321 atcacagggc tgctattaac aagagatgga ggaggtgggg gacagaatga gaccttcaga 
    1381 cctgcagggg gagatatgag ggacaattgg agaagtgaat tatataaata taaggtagta 
    1441 aaaattgaac cattaggagt agcacccacc agggcaaaga gaagagtggt gcagagagaa 
    1501 aaaagaggag taggaatagg agctatggtc cttgggttct tgggagcagc aggaagcact 
    1561 atgggcgcag catcaatgat gctgacggta caagccagac aattgttgtc tggtatagtg 
    1621 caacagcaga acaatctgct gagagctatt gaggcgcaac aacatatgtt gcaactcaca 
    1681 gtctggggca tcaagcagct ccaggcaaga gtcctggctc tggaaagata cctaagcgac 
    1741 caacagctcc tgggaatttg gggctgctct ggaaaactca tttgccccac tgctgtgcct 
    1801 tggaatgcta gttggagtaa caaatcctat tcagagattt ggaataacat gacctggata 
    1861 gagtgggaaa gagaaattga caattacaca ggggaaatat acaggttaat tgaagaatcg 
    1921 caaaaccaac aagaaaggaa tgaaaaagac ttattggaat tagacaaatg ggcaagtttg 
    1981 tggaattggt ttgacatatc aaaatggctg tggtatataa aaatattcat aatgatagta 
    2041 ggaggcatag taggtcttag aatagttttt actgtacttt ctatagtgaa tagagttagg 
    2101 cagggatact caccattatc atttcagacc cgcctcccag cagcgagggg accagacagg 
    2161 cccgaaggaa tcgaagaaga cggtggagag agagacagag acagatccaa cagattagcg 
    2221 ggtggattct tagcacttat ctgggtcgat ctgcggaacc tgtgcctctt cctctaccac 
    2281 cgcttgagag acttactctt ggttctaacg aggactgtgg aacttctggg tcgcaggggg 
    2341 tgggaagccc tcaagtattg gtggaatctc ctgcagtatt ggagtcagga actaaagaat 
    2401 agtgctgtta gcttgctcaa tgccattgcc atagcagtag ctgaagggac agataggata 
    2461 atagaagtgt tacaaagatt tattagaact gttctccaca tacctacaag aataagacag 
    2521 ggcttagaaa gagctttact ataa
//
last modified: Tue May 31 10:56 2022


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