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LOCUS JX972236 2544 bp RNA linear VRL 16-MAR-2013
DEFINITION HIV-1 isolate B.700010058.w24.154dps.3_C4 from USA envelope
glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev
protein (rev), and tat protein (tat) genes, partial cds
ACCESSION JX972236
VERSION JX972236.1 GI:459963311
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2544)
Show all sequences for reference 1
AUTHORS Liu,M.K., Hawkins,N., Ritchie,A.J., Ganusov,V.V., Whale,V.,
Brackenridge,S., Li,H., Pavlicek,J.W., Cai,F., Rose-Abrahams,M.,
Treurnicht,F., Hraber,P., Riou,C., Gray,C., Ferrari,G., Tanner,R.,
Ping,L.H., Anderson,J.A., Swanstrom,R., B,C.C., Cohen,M.,
Karim,S.S., Haynes,B., Borrow,P., Perelson,A.S., Shaw,G.M.,
Hahn,B.H., Williamson,C., Korber,B.T., Gao,F., Self,S.,
McMichael,A. and Goonetilleke,N.
TITLE Vertical T cell immunodominance and epitope entropy determine HIV-1
escape
JOURNAL J. Clin. Invest. 123 (1), 380-393 (2013)
PUBMED 23221345
REFERENCE 2 (bases 1 to 2544)
Show all sequences for reference 2
AUTHORS Liu,M., Liu,M.K., Hawkins,N., Ritchie,A., Ritchie,A.J.,
Ganusov,V.V., Ganusov,V., Whale,V., Brackenridge,S., Li,H.,
Pavliceck,J., Pavlicek,J.W., Cai,F., Abrahams,M.-R., Treurnicht,F.,
Hraber,P., Hraber,P.T., Riou,C., Gray,C., Ferrari,G., Tanner,R.,
Ping,L.-H., Anderson,J.A., Anderson,J., Swanstrom,R., Cohen,M.S.,
Cohen,M., Abdool Karim,S., Abdool Karim,S.S., Haynes,B.,
Haynes,B.F., Borrow,P., Perelson,A., Shaw,G., Hahn,B., Hahn,B.H.,
Williamson,C., Korber,B., Korber,B.T., Gao,F., Self,S.,
McMichael,A., McMichael,A.J. and Goonetilleke,N.
CONSRTM CHAVI Core B
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2012) T6 MS K710, LANL, PO Box 1663, Los Alamos,
NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 700010058 Days
post-screening 154 Sample timepoint w24 Patient sex M Fiebig Stage
x Viral Load 205 CD4 count 830 HLA type A*0101 A*2301 B*1402 B*5701
Cw*0701 Cw*0802 Infection date 2006 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2544
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="B.700010058.w24.154dps.3_C4"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2007"
/note="subtype: B"
gene 1..2544
/gene="env"
CDS 1..2544
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGG91882.1"
/db_xref="GI:459963315"
/translation="MRVTGIKKNYQNLWKWGIMLLGMLMIYSTAEQLWVTVYYGVPVW
REATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIILANVTENFNMWENNMVDQ
MHEDIISLWDQSLKPCVQLTPLCVTLNCTELNNNSTTTTNSSEGKEMKNCSFNIPTSM
QDKTKKEYALFYKLDIVKIDDSNNSTNNSTYRLISCNTSVVTQACPKVSFQPIPIHYC
APAGFAILKCNNKAFNGTGQCTNVSTVQCTHGIRPVVSTQLLLNGSLAEKDIVLRSAN
FTNNAKTIIVQLNESVIINCTRPNNNTRKSITIGPGRAFYATGDIIGDIRQAHCNLSR
EQWDNTLKKIVTKLREQFNKTIIFKSPSGGDPEIVQHTFNCGGEFFYCDTKQLFNSTW
NATKANGTTGNDTIILPCRIKQIINMWQKVGKAMYAPPIKGKISCSSNITGLLLTRDG
GGGGQNETFRPAGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRGVGIGA
MVLGFLGAAGSTMGAASMMLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQ
LQARVLALERYLSDQQLLGIWGCSGKLICPTAVPWNASWSNKSYSEIWNNMTWIEWER
EIDNYTGEIYRLIEESQNQQERNEKDLLELDKWASLWNWFDISKWLWYIKIFIMIVGG
IVGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAARGPDRPEGIEEDGGERDRDRSNRLA
GGFLALIWVDLRNLCLFLYHRLRDLLLVLTRTVELLGRRGWEALKYWWNLLQYWSQEL
KNSAVSLLNAIAIAVAEGTDRIIEVLQRFIRTVLHIPTRIRQGLERALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="AGG91881.1"
/db_xref="GI:459963314"
/translation="ESDGDQEELSKLMEMGHHAPWDVNDL"
gene <2128..2402
/gene="rev"
CDS <2128..2402
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="AGG91880.1"
/db_xref="GI:459963313"
/translation="PPPSSEGTRQARRNRRRRWRERQRQIQQISGWILSTYLGRSAEP
VPLPLPPLERLTLGSNEDCGTSGSQGVGSPQVLVESPAVLESGTKE"
gene <2128..2218
/gene="tat"
CDS <2128..2218
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="AGG91879.1"
/db_xref="GI:459963312"
/translation="PASQQRGDQTGPKESKKTVERETETDPTD"
BASE COUNT 892 a 449 c 592 g 611 t
ORIGIN
1 atgagagtga cggggatcaa gaagaattat caaaacttat ggaaatgggg catcatgctc
61 cttgggatgt taatgatcta tagtacagca gaacaattgt gggtcacagt ctattatggg
121 gtgcctgtgt ggagagaagc aactaccacc ctattttgtg catcagatgc taaagcatat
181 gatacagagg tgcataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaaataa tattggcaaa tgtgacagaa aattttaaca tgtgggaaaa taacatggta
301 gaccaaatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtacaa
361 ttaaccccac tctgtgtcac tttaaattgc actgagttga ataataatag taccactacc
421 actaatagta gcgagggaaa ggaaatgaag aactgttctt tcaacatccc cacaagcatg
481 caggataaga cgaagaaaga atatgcactc ttttataaac ttgatatagt aaaaatagat
541 gatagtaata atagtaccaa taatagtacc tataggttga taagttgtaa cacctcagtc
601 gttacacagg cctgtccaaa ggtatctttt cagccaattc ctatacatta ttgtgccccg
661 gctggttttg cgattctaaa gtgtaataat aaggctttca atggaacagg acaatgtaca
721 aatgtcagca cagtgcaatg cacacatgga attaggccag tagtatcaac tcaactgctg
781 ttaaatggca gtctagcaga aaaagatata gtacttaggt ctgccaattt cacaaacaat
841 gctaaaacca taatagtaca gctgaatgaa tctgtaataa ttaattgtac aagacccaac
901 aacaatacaa gaaaaagtat aactatagga ccagggagag cattttatgc aacaggagat
961 ataataggag acataagaca agcacattgt aaccttagta gagaacaatg ggataacact
1021 ttaaagaaga tagttacaaa attaagagaa cagtttaata aaacaataat ctttaagtcc
1081 ccctcaggag gggacccaga aattgtacag cacactttta attgtggagg ggaatttttc
1141 tactgtgata caaaacaact gtttaatagt acttggaatg ctactaaggc aaatggcact
1201 acaggaaatg acacaatcat actcccatgc agaataaagc aaattataaa catgtggcag
1261 aaagtaggaa aagcaatgta tgcccctccc atcaaaggaa aaattagttg ctcatcaaat
1321 atcacagggc tgctattaac aagagatgga ggaggtgggg gacagaatga gaccttcaga
1381 cctgcagggg gagatatgag ggacaattgg agaagtgaat tatataaata taaggtagta
1441 aaaattgaac cattaggagt agcacccacc agggcaaaga gaagagtggt gcagagagaa
1501 aaaagaggag taggaatagg agctatggtc cttgggttct tgggagcagc aggaagcact
1561 atgggcgcag catcaatgat gctgacggta caagccagac aattgttgtc tggtatagtg
1621 caacagcaga acaatctgct gagagctatt gaggcgcaac aacatatgtt gcaactcaca
1681 gtctggggca tcaagcagct ccaggcaaga gtcctggctc tggaaagata cctaagcgac
1741 caacagctcc tgggaatttg gggctgctct ggaaaactca tttgccccac tgctgtgcct
1801 tggaatgcta gttggagtaa caaatcctat tcagagattt ggaataacat gacctggata
1861 gagtgggaaa gagaaattga caattacaca ggggaaatat acaggttaat tgaagaatcg
1921 caaaaccaac aagaaaggaa tgaaaaagac ttattggaat tagacaaatg ggcaagtttg
1981 tggaattggt ttgacatatc aaaatggctg tggtatataa aaatattcat aatgatagta
2041 ggaggcatag taggtcttag aatagttttt actgtacttt ctatagtgaa tagagttagg
2101 cagggatact caccattatc atttcagacc cgcctcccag cagcgagggg accagacagg
2161 cccgaaggaa tcgaagaaga cggtggagag agagacagag acagatccaa cagattagcg
2221 ggtggattct tagcacttat ctgggtcgat ctgcggaacc tgtgcctctt cctctaccac
2281 cgcttgagag acttactctt ggttctaacg aggactgtgg aacttctggg tcgcaggggg
2341 tgggaagccc tcaagtattg gtggaatctc ctgcagtatt ggagtcagga actaaagaat
2401 agtgctgtta gcttgctcaa tgccattgcc atagcagtag ctgaagggac agataggata
2461 atagaagtgt tacaaagatt tattagaact gttctccaca tacctacaag aataagacag
2521 ggcttagaaa gagctttact ataa
//
last modified: Tue May 31 10:56 2022