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LOCUS	    JX497860		    2716 bp    RNA     linear	VRL 04-FEB-2013
DEFINITION  Simian immunodeficiency virus isolate M385.rec.P2D1 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; envelope glycoprotein (env) gene, complete cds; and nef
	    protein (nef) gene, partial cds
ACCESSION   JX497860
VERSION     JX497860.1 GI:444338896
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2716)
            Show all sequences for reference 1
  AUTHORS   Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
	    Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
	    Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,S.M.,
	    Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
	    Kim,J., Venzon,D. and Franchini,G.
  TITLE     Antibodies with High Avidity to the gp120 Envelope Protein in
	    Protection from Simian Immunodeficiency Virus SIVmac251 Acquisition
	    in an Immunization Regimen That Mimics the RV-144 Thai Trial
  JOURNAL   J. Virol. 87 (3), 1708-1719 (2013)
  PUBMED    23175374
REFERENCE   2 (bases 1 to 2716)
            Show all sequences for reference 2
  AUTHORS   Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
	    Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
	    Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,M.S.,
	    Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
	    Kim,J., Venzon,D. and Franchini,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2012) AIDS and Cancer Virus Program,
	    SAIC-Frederick, Inc. Frederick National Lab, 1050 Boyles Street,
	    Frederick, MD 21702, USA
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 4.8
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2716
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="M385.rec.P2D1"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="15-Jul-2010"
     gene	     1..2532
		     /gene="rev"
     CDS	     join(1..70,2279..2532)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AGE03781.1"
		     /db_xref="GI:444338897"
		     /translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
		     KRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCGPTENS
		     RSPQD"
     gene	     <1..2375
		     /gene="tat"
     CDS	     join(<1..70,2279..2375)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AGE03782.1"
		     /db_xref="GI:444338898"
		     /translation="EQSRKRRRTPKKAKANTPSASNKPISNRTRHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2716
		     /gene="env"
     CDS	     77..2716
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGE03783.1"
		     /db_xref="GI:444338899"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSTTTASTTTTTAPAKIDMVNETSSCITHDNCTGL
		     EQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSIIQE
		     SCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFG
		     FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQP
		     VNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMW
		     TNCRGEFLYCKMNWFLNWVEDRDLTTQRPKERHRRNYVPCHIRQIINTWHKVGKNVYL
		     PPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
		     PTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLVGIVQQQQ
		     QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWP
		     NASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWF
		     DLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQTHIQQD
		     PALPTREGKEGDGGESGGNSSWPWQIEYIHFLIRQLIRLLTWLFNNCRTLLSRAYQIL
		     QPILQRLSAALQRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLWETL
		     RRGGRWILAIPRRIRQGLELTLL"
     gene	     2550..>2716
		     /gene="nef"
     CDS	     2550..>2716
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGE03784.1"
		     /db_xref="GI:444338900"
		     /translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
		     GLDKGLSSLSC"
BASE COUNT	871 a	 520 c	  652 g    673 t
ORIGIN
       1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acaccttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattgacaaa atcatcaaca acaacagcat caacaacaac 
     481 aacgacagca ccagcaaaaa tagacatggt caatgagact agttcttgta taactcatga 
     541 taattgcaca ggcttggaac aagagcaaat gataggctgt aaattcaaca tgacagggtt 
     601 aaaaagagac aagacaaagg agtacaatga aacttggtac tctacagatt tggtttgtga 
     661 acaagggaat agcactgata atgaaagtag atgttacatg aatcactgta acacttctat 
     721 tatccaagag tcttgtgaca agcattattg ggatactatt agatttaggt attgtgcacc 
     781 tccaggttat gctttgctta gatgtaatga cacaaattac tcaggcttta tgcctaaatg 
     841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt 
     901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa 
     961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg 
    1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccagt 
    1081 caatgagaga ccaaaccagg catggtgttg gtttggagga aattggaagg atgcaataaa 
    1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa 
    1201 aatcaatttg acggctccta gaggaggaga tccggaagtt accttcatgt ggacaaattg 
    1261 cagaggagag tttctctact gtaaaatgaa ttggtttcta aattgggtag aagataggga 
    1321 tctaactacc cagaggccaa aggaacggca tagaaggaat tacgtgccat gtcatattag 
    1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg 
    1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggactgatgg 
    1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg 
    1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacagatg tgaagaggta 
    1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt 
    1681 tctcgcaacg gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg 
    1741 gactttattg gttgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca 
    1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc 
    1861 catcgagaag tacttaaagg accaggcgca actgaatgct tggggatgtg cgtttagaca 
    1921 agtctgccac actactgtac catggccaaa tgcaagtcta acaccagatt ggaacaatga 
    1981 cacttggcaa gagtgggagc gaaaggttga cttcttggag gaaaatataa cggcccttct 
    2041 agaagaggca caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagctg 
    2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aggtatatac aatatggaat 
    2161 ttatatagtt gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc 
    2221 taagttaagg caggggtata ggccagtgtt ctcttcccca ccctcttatt cccagcagac 
    2281 ccatatccaa caggacccgg cactgccaac cagagaaggc aaagaaggag acggtggaga 
    2341 aagcggtggc aacagctcct ggccttggca gatagaatat attcatttcc tgatccgcca 
    2401 actgatacgc ctcttgactt ggctattcaa caactgcaga accttgctat cgagagcata 
    2461 ccagatcctc caaccaatac tccagaggct ctctgcggcc ctacagagaa ttcgagaagt 
    2521 cctcaggact gaactgacct acctacaata tgggtggagc tatttccatg aggcggtcca 
    2581 agccggctgg agatctgcga cagagactct tgcgggcgcg tggggagact tatgggagac 
    2641 tcttaggaga ggtggaagat ggatcctcgc aatccctagg aggattagac aagggcttga 
    2701 gctcactctc ttgtga
//
last modified: Tue May 31 10:56 2022


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