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LOCUS JX497860 2716 bp RNA linear VRL 04-FEB-2013
DEFINITION Simian immunodeficiency virus isolate M385.rec.P2D1 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; envelope glycoprotein (env) gene, complete cds; and nef
protein (nef) gene, partial cds
ACCESSION JX497860
VERSION JX497860.1 GI:444338896
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2716)
Show all sequences for reference 1
AUTHORS Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,S.M.,
Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
Kim,J., Venzon,D. and Franchini,G.
TITLE Antibodies with High Avidity to the gp120 Envelope Protein in
Protection from Simian Immunodeficiency Virus SIVmac251 Acquisition
in an Immunization Regimen That Mimics the RV-144 Thai Trial
JOURNAL J. Virol. 87 (3), 1708-1719 (2013)
PUBMED 23175374
REFERENCE 2 (bases 1 to 2716)
Show all sequences for reference 2
AUTHORS Pegu,P., Vaccari,M., Gordon,S., Keele,B.F., Doster,M., Guan,Y.,
Ferrari,G., Pal,R., Ferrari,M.G., Whitney,S., Hudacik,L.,
Billings,E., Rao,M., Montefiori,D., Tomaras,G., Alam,M.S.,
Fenizia,C., Lifson,J.D., Stablein,D., Tartaglia,J., Michael,N.,
Kim,J., Venzon,D. and Franchini,G.
TITLE Direct Submission
JOURNAL Submitted (06-AUG-2012) AIDS and Cancer Virus Program,
SAIC-Frederick, Inc. Frederick National Lab, 1050 Boyles Street,
Frederick, MD 21702, USA
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 4.8
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2716
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="M385.rec.P2D1"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="15-Jul-2010"
gene 1..2532
/gene="rev"
CDS join(1..70,2279..2532)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AGE03781.1"
/db_xref="GI:444338897"
/translation="MSSHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRRRRWR
KRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCGPTENS
RSPQD"
gene <1..2375
/gene="tat"
CDS join(<1..70,2279..2375)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="AGE03782.1"
/db_xref="GI:444338898"
/translation="EQSRKRRRTPKKAKANTPSASNKPISNRTRHCQPEKAKKETVEK
AVATAPGLGR"
gene 77..2716
/gene="env"
CDS 77..2716
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGE03783.1"
/db_xref="GI:444338899"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSTTTASTTTTTAPAKIDMVNETSSCITHDNCTGL
EQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSIIQE
SCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFG
FNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQP
VNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMW
TNCRGEFLYCKMNWFLNWVEDRDLTTQRPKERHRRNYVPCHIRQIINTWHKVGKNVYL
PPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLA
PTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLVGIVQQQQ
QLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWP
NASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWF
DLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQTHIQQD
PALPTREGKEGDGGESGGNSSWPWQIEYIHFLIRQLIRLLTWLFNNCRTLLSRAYQIL
QPILQRLSAALQRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLWETL
RRGGRWILAIPRRIRQGLELTLL"
gene 2550..>2716
/gene="nef"
CDS 2550..>2716
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AGE03784.1"
/db_xref="GI:444338900"
/translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
GLDKGLSSLSC"
BASE COUNT 871 a 520 c 652 g 673 t
ORIGIN
1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acaccttctg
61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt
121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg
181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac
241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt
301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga
361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa
421 aagtgagaca gataaatggg gattgacaaa atcatcaaca acaacagcat caacaacaac
481 aacgacagca ccagcaaaaa tagacatggt caatgagact agttcttgta taactcatga
541 taattgcaca ggcttggaac aagagcaaat gataggctgt aaattcaaca tgacagggtt
601 aaaaagagac aagacaaagg agtacaatga aacttggtac tctacagatt tggtttgtga
661 acaagggaat agcactgata atgaaagtag atgttacatg aatcactgta acacttctat
721 tatccaagag tcttgtgaca agcattattg ggatactatt agatttaggt attgtgcacc
781 tccaggttat gctttgctta gatgtaatga cacaaattac tcaggcttta tgcctaaatg
841 ttctaaggtg gtggtctctt catgcacaag gatgatggag acacagactt ctacttggtt
901 tggctttaat ggaactagag cagaaaatag aacttatatt tactggcatg gtagggataa
961 taggactata attagtttaa ataagtatta taatctaaca atgaaatgta gaagaccagg
1021 aaataagaca gttttaccag tcaccattat gtctggattg gttttccact cacaaccagt
1081 caatgagaga ccaaaccagg catggtgttg gtttggagga aattggaagg atgcaataaa
1141 agaggtgaag cagaccattg tcaaacatcc caggtatact ggaactaaca atactgataa
1201 aatcaatttg acggctccta gaggaggaga tccggaagtt accttcatgt ggacaaattg
1261 cagaggagag tttctctact gtaaaatgaa ttggtttcta aattgggtag aagataggga
1321 tctaactacc cagaggccaa aggaacggca tagaaggaat tacgtgccat gtcatattag
1381 acaaataatc aacacttggc ataaagtagg caaaaatgtt tatttgcctc caagagaggg
1441 agacctcacg tgtaactcca cagtgaccag tctcatagca aacatagatt ggactgatgg
1501 aaaccaaact aatatcacca tgagtgcaga ggtggcagaa ctgtatcgat tggaattggg
1561 agattataaa ttagtagaga tcactccaat tggcttggcc cccacagatg tgaagaggta
1621 cactactggt ggcacctcaa gaaataaaag aggggtcttt gtgctagggt tcttgggttt
1681 tctcgcaacg gcaggttctg caatgggcgc ggcgtcgttg acgctgaccg ctcagtcccg
1741 gactttattg gttgggatag tgcagcaaca gcaacagctg ttggacgtgg tcaagagaca
1801 acaagaattg ttgcgactga ccgtctgggg aacaaagaac ctccagacta gggtcactgc
1861 catcgagaag tacttaaagg accaggcgca actgaatgct tggggatgtg cgtttagaca
1921 agtctgccac actactgtac catggccaaa tgcaagtcta acaccagatt ggaacaatga
1981 cacttggcaa gagtgggagc gaaaggttga cttcttggag gaaaatataa cggcccttct
2041 agaagaggca caaattcaac aagagaagaa catgtatgaa ttacaaaagt tgaatagctg
2101 ggatgtgttt ggcaattggt ttgaccttgc ttcttggata aggtatatac aatatggaat
2161 ttatatagtt gtaggagtaa tactgttaag aatagtgatc tatatagtac aaatgctagc
2221 taagttaagg caggggtata ggccagtgtt ctcttcccca ccctcttatt cccagcagac
2281 ccatatccaa caggacccgg cactgccaac cagagaaggc aaagaaggag acggtggaga
2341 aagcggtggc aacagctcct ggccttggca gatagaatat attcatttcc tgatccgcca
2401 actgatacgc ctcttgactt ggctattcaa caactgcaga accttgctat cgagagcata
2461 ccagatcctc caaccaatac tccagaggct ctctgcggcc ctacagagaa ttcgagaagt
2521 cctcaggact gaactgacct acctacaata tgggtggagc tatttccatg aggcggtcca
2581 agccggctgg agatctgcga cagagactct tgcgggcgcg tggggagact tatgggagac
2641 tcttaggaga ggtggaagat ggatcctcgc aatccctagg aggattagac aagggcttga
2701 gctcactctc ttgtga
//
last modified: Tue May 31 10:56 2022