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LOCUS JX460055 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-003840 from USA pol protein (pol) gene, partial
cds
ACCESSION JX460055
VERSION JX460055.1 GI:508096513
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-003840"
/isolation_source="male, 43 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: Massachusetts"
/collection_date="2008"
/note="subtype: A1"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04422.1"
/db_xref="GI:508096514"
/translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQILIEICGKXAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVXQWPLTEEKIRALTEICTEMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILXPFRSQNPE
IIIYQYMDDLYVGSDLEIXQHRXKIEELRAHLLXWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPVVLPEKXHWTVNDIQKLVGKLNWASQIYAGIRIKQLCKLLRGAKALTDIV
TLTEEAELELAENREILKDPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 498 a 215 c 266 g 288 t 35 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacagtaa gaataggggg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaata ggaggyttca tcaaagtaaa acaatatgat
181 cagatactta tagaaatttg tggaaaaarg gctataggta cagtcttagt aggacctaca
241 cctgtcaaca taattggaag gaacatgttg acccagattg gttgtacttt aaatttccca
301 attagtccta ttgagactgt rccagtaaaa ctaaarccag gaatggatgg cccaaaggtt
361 aamcaatggc cattgacaga agaaaaaata agagcattaa cagaaatttg tacagagatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt
481 gcrataaaga aaaaagatag cactaaatgg agaaaattag tagatttcag agarctcaat
541 aaaagaacac aagacttttg ggargttcaa ttaggratcc cgcatccagc gggcctaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcctytagat
661 gaaagcttta gaaagtatac tgcgttcacc atacctagta gaaacaatga gacrccagga
721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt aragcccttt agatcacaaa atccagaaat aattatctat
841 caatacatgg atgacttgta tgtagggtct gatttagaaa tagrrcarca tagarcaaaa
901 atagargart tgagagctca yctrttaagv tggggrttta ccacaccaga caaraagcat
961 cagaaagaac ctccattcct ttggatggga tatgagctcc atcctgacaa gtggacagtc
1021 cagcctgtag taytgccaga aaaagamcac tggactgtca atgatataca gaarttagtr
1081 gggaaactaa attgggcaag tcaaatytat gcaggratta gaataaagca attrtgtaaa
1141 cttctcaggg gagccaaagc actracagay atagtaacat tractgagga agcagaatta
1201 gaattrgcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caaggrcaag ac
//
last modified: Tue May 31 10:56 2022