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LOCUS	    JX460055		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-003840 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX460055
VERSION     JX460055.1 GI:508096513
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-003840"
		     /isolation_source="male, 43 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: Massachusetts"
		     /collection_date="2008"
		     /note="subtype: A1"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04422.1"
		     /db_xref="GI:508096514"
		     /translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQILIEICGKXAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVXQWPLTEEKIRALTEICTEMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILXPFRSQNPE
		     IIIYQYMDDLYVGSDLEIXQHRXKIEELRAHLLXWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPVVLPEKXHWTVNDIQKLVGKLNWASQIYAGIRIKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKDPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	498 a	 215 c	  266 g    288 t     35 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa gaataggggg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaata ggaggyttca tcaaagtaaa acaatatgat 
     181 cagatactta tagaaatttg tggaaaaarg gctataggta cagtcttagt aggacctaca 
     241 cctgtcaaca taattggaag gaacatgttg acccagattg gttgtacttt aaatttccca 
     301 attagtccta ttgagactgt rccagtaaaa ctaaarccag gaatggatgg cccaaaggtt 
     361 aamcaatggc cattgacaga agaaaaaata agagcattaa cagaaatttg tacagagatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaatc catacaatac tccaatattt 
     481 gcrataaaga aaaaagatag cactaaatgg agaaaattag tagatttcag agarctcaat 
     541 aaaagaacac aagacttttg ggargttcaa ttaggratcc cgcatccagc gggcctaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tcctytagat 
     661 gaaagcttta gaaagtatac tgcgttcacc atacctagta gaaacaatga gacrccagga 
     721 atcaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt aragcccttt agatcacaaa atccagaaat aattatctat 
     841 caatacatgg atgacttgta tgtagggtct gatttagaaa tagrrcarca tagarcaaaa 
     901 atagargart tgagagctca yctrttaagv tggggrttta ccacaccaga caaraagcat 
     961 cagaaagaac ctccattcct ttggatggga tatgagctcc atcctgacaa gtggacagtc 
    1021 cagcctgtag taytgccaga aaaagamcac tggactgtca atgatataca gaarttagtr 
    1081 gggaaactaa attgggcaag tcaaatytat gcaggratta gaataaagca attrtgtaaa 
    1141 cttctcaggg gagccaaagc actracagay atagtaacat tractgagga agcagaatta 
    1201 gaattrgcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caaggrcaag ac
//
last modified: Tue May 31 10:56 2022


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