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LOCUS	    JX460033		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-003029 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX460033
VERSION     JX460033.1 GI:508096469
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-003029"
		     /isolation_source="female, 43 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: Massachusetts"
		     /collection_date="2007"
		     /note="subtype: D"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04400.1"
		     /db_xref="GI:508096470"
		     /translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQVLVDICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIRALTEICTELEKEGKISXIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LYEDFKKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRXKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIXLPXKXSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKCLKGAKALTEVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	511 a	 208 c	  266 g    294 t     23 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa agataggggg rcagctaagg 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aagtggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caagtacttg tagayatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag gaacttgttg actcaaattg gttgcacttt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gratggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata agagcattaa cagaaatttg tacagaacta 
     421 gaaaaggaag gaaaaatttc aaraattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttrggaatac cacatcctgc agggytaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggtgatgcat atttttcagt tcccttatat 
     661 gaagacttta aaaaatatac tgcattcacc atacccagta taaacaatga gacaccagga 
     721 rttagatatc agtacaatgt gctkccacaa ggatggaaag gatcaccrgc aatmttccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagara tagggcagca cagaatraaa 
     901 atagaggart taagggarca cctattgaaa tggggrttta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgayaa atggacagta 
    1021 cagcctatam wactaccaga maaagamagc tggactgtca atgayataca gaagttagtg 
    1081 ggaaaattaa attgggcaag ccagatttat gcagggatya aagtaaaaca attatgcaaa 
    1141 tgccttaagg gagccaaggc actgacagag gtagtaccac tgachgaaga agcagaatta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggggtgta ttatgaccca 
    1261 tcaaaagatt taatagcaga aattcagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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