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LOCUS JX460033 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-003029 from USA pol protein (pol) gene, partial
cds
ACCESSION JX460033
VERSION JX460033.1 GI:508096469
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-003029"
/isolation_source="female, 43 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: Massachusetts"
/collection_date="2007"
/note="subtype: D"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04400.1"
/db_xref="GI:508096470"
/translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQVLVDICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIRALTEICTELEKEGKISXIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LYEDFKKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRXKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIXLPXKXSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKCLKGAKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 511 a 208 c 266 g 294 t 23 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacagtaa agataggggg rcagctaagg
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aagtggaaac caaaaatgat agggggaatt ggaggcttta tcaaagtaag acagtatgat
181 caagtacttg tagayatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag gaacttgttg actcaaattg gttgcacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gratggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata agagcattaa cagaaatttg tacagaacta
421 gaaaaggaag gaaaaatttc aaraattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttrggaatac cacatcctgc agggytaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggtgatgcat atttttcagt tcccttatat
661 gaagacttta aaaaatatac tgcattcacc atacccagta taaacaatga gacaccagga
721 rttagatatc agtacaatgt gctkccacaa ggatggaaag gatcaccrgc aatmttccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagara tagggcagca cagaatraaa
901 atagaggart taagggarca cctattgaaa tggggrttta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgayaa atggacagta
1021 cagcctatam wactaccaga maaagamagc tggactgtca atgayataca gaagttagtg
1081 ggaaaattaa attgggcaag ccagatttat gcagggatya aagtaaaaca attatgcaaa
1141 tgccttaagg gagccaaggc actgacagag gtagtaccac tgachgaaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggggtgta ttatgaccca
1261 tcaaaagatt taatagcaga aattcagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022