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LOCUS JX459994 1302 bp RNA linear VRL 23-JUN-2013
DEFINITION HIV-1 isolate HIVST-001577 from USA pol protein (pol) gene, partial
cds
ACCESSION JX459994
VERSION JX459994.1 GI:508096391
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
TITLE Large-Scale Analysis of the Prevalence and Geographic Distribution
of HIV-1 Non-B Variants in the United States.
JOURNAL J. Clin. Microbiol.. 51(8); 2662-9 (2013)
PUBMED 23761148
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2012) ARUP Institute for Clinical and
Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
Lake City, UT 84108, USA
COMMENT ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="HIVST-001577"
/isolation_source="male, 38 years"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA: New York"
/collection_date="2007"
/note="subtype: URF_BG"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGN04361.1"
/db_xref="GI:508096392"
/translation="PQITLWQRPLVTVRIGGQLXEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPE
VVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPBXEXWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVX
PLTAEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT 518 a 212 c 271 g 290 t 11 other
ORIGIN
1 cctcaaatca ctctttggca gcgaccccta gtcacagtaa gaataggggg acagctaatr
61 gaagccctat tagayacagg agcagatgat acagtattag aagatataaa tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggga cagtattagt aggacctaca
241 cctatcaaca taatcggrag aaatatgttg actcaaattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaagtg
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaacac tccagtattt
481 gccataaaga agaaagacag tactaaatgg agaaaattag tagatttcag agagctcaat
541 aaaagaactc aagacttctg ggaggtccaa ttaggaatac cccatcccgc ggggttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttctcagt tcccttagat
661 gaaaatttta gaaaatatac agcattcact atacctagta taaataatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag ggtcaccagc aatattccaa
781 tgtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaagt agttatttat
841 caatacatgg atgatttata tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgaag tggggattta ccacaccaga taaaaaacat
961 cagaaagagc ccccattcct ttggatggga tatgagctcc acccygacaa atggacagta
1021 caacctatac agctgccara caragaawgc tggactgtca aygacataca gaagttagtg
1081 ggaaaattra attgggcaag tcagatttat ccagggatta aagtaaggca actatgtaaa
1141 ctccttagrg gaaccaaagc attaacagaa gtartaccac taacagcaga agcagagcta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga aatacagaaa caggggcaag gc
//
last modified: Tue May 31 10:56 2022