HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JX459994		    1302 bp    RNA     linear	VRL 23-JUN-2013
DEFINITION  HIV-1 isolate HIVST-001577 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JX459994
VERSION     JX459994.1 GI:508096391
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Pyne,M.T., Hackett,J.J., Holzmayer,V. and Hillyard,D.R.
  TITLE     Large-Scale Analysis of the Prevalence and Geographic Distribution
	    of HIV-1 Non-B Variants in the United States.
  JOURNAL   J. Clin. Microbiol.. 51(8); 2662-9 (2013)
  PUBMED    23761148
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Pyne,M.T., Hackett,J. Jr.., Holzmayer,V. and Hillyard,D.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2012) ARUP Institute for Clinical and
	    Experimental Pathology, ARUP Laboratories, 500 Chipeta Way, Salt
	    Lake City, UT 84108, USA
COMMENT     ##Assembly-Data-START## Assembly Method ViroSeq HIV-1 Genotyping
	    Software v. 2.8 Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="HIVST-001577"
		     /isolation_source="male, 38 years"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA: New York"
		     /collection_date="2007"
		     /note="subtype: URF_BG"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGN04361.1"
		     /db_xref="GI:508096392"
		     /translation="PQITLWQRPLVTVRIGGQLXEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPE
		     VVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPBXEXWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVX
		     PLTAEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT	518 a	 212 c	  271 g    290 t     11 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccccta gtcacagtaa gaataggggg acagctaatr 
      61 gaagccctat tagayacagg agcagatgat acagtattag aagatataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggga cagtattagt aggacctaca 
     241 cctatcaaca taatcggrag aaatatgttg actcaaattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaagtg 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaacac tccagtattt 
     481 gccataaaga agaaagacag tactaaatgg agaaaattag tagatttcag agagctcaat 
     541 aaaagaactc aagacttctg ggaggtccaa ttaggaatac cccatcccgc ggggttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttctcagt tcccttagat 
     661 gaaaatttta gaaaatatac agcattcact atacctagta taaataatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag ggtcaccagc aatattccaa 
     781 tgtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaagt agttatttat 
     841 caatacatgg atgatttata tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgaag tggggattta ccacaccaga taaaaaacat 
     961 cagaaagagc ccccattcct ttggatggga tatgagctcc acccygacaa atggacagta 
    1021 caacctatac agctgccara caragaawgc tggactgtca aygacataca gaagttagtg 
    1081 ggaaaattra attgggcaag tcagatttat ccagggatta aagtaaggca actatgtaaa 
    1141 ctccttagrg gaaccaaagc attaacagaa gtartaccac taacagcaga agcagagcta 
    1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaaa caggggcaag gc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health