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LOCUS	    JX440969		     651 bp    RNA     linear	VRL 30-JAN-2013
DEFINITION  HIV-1 isolate CP_99 from USA nef protein gene, complete cds
ACCESSION   JX440969
VERSION     JX440969.1 GI:443900555
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 651)
            Show all sequences for reference 1
  AUTHORS   Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
	    Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
	    Brumme,Z.L., Brockman,M.A. and Ueno,T.
  TITLE     Attenuation of multiple Nef functions in HIV-1 elite controllers
  JOURNAL   Retrovirology 10 (1), 1 (2013)
  PUBMED    23289738
REFERENCE   2 (bases 1 to 651)
            Show all sequences for reference 2
  AUTHORS   Mwimanzi,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
	    University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
	    Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
  TITLE     Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
	    HIV-1 Entry Receptors.
  JOURNAL   J. Virol.. 89(18); 9639-52 (2015)
  PUBMED    26178998
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..651
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CP_99"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     CDS	     1..651
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGD79233.1"
		     /db_xref="GI:443900556"
		     /translation="MGGKWSKRLREWPAVRERMQRAEPRERRQRARAEPAAEGVGAVS
		     RDLAQRGAITSSNTPATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLK
		     EKGGLEGLIYSQRRQDILDLWIYNTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPIEQ
		     EDVEKATERENTLLLHPISLHGMDDPEGEVLMWKFDSRLAFHHMAREKHPEYYKDC"
BASE COUNT	204 a	 135 c	  184 g    128 t
ORIGIN
       1 atgggtggca agtggtcaaa acgcttgagg gaatggcctg ctgtaaggga aagaatgcaa 
      61 cgagccgagc caagggaaag aaggcaaaga gctagagctg agccagcagc agaaggggtg 
     121 ggagcagtat ctcgagactt ggcacaacgc ggagcaatta caagtagcaa tacaccagct 
     181 actaatgctg attgtgcctg gctagaagca caagaggagg aggaagtggg tttcccagtc 
     241 agacctcagg tacctttaag acctatgact tacaaaggag ctctggattt gagccacttt 
     301 ttaaaagaaa aggggggact ggaagggtta atttactccc aaagaagaca agatatcctt 
     361 gatctgtgga tctacaacac acaaggctac ttccctgatt ggcagaacta cactccaggg 
     421 ccaggggtca gatacccact gacctttgga tggtgcttca agctggtacc aattgagcaa 
     481 gaggatgtag aaaaggccac tgaaagagag aacaccctac tgttacatcc tataagcctg 
     541 catgggatgg atgacccaga gggagaagta ttaatgtgga agtttgacag tcgcctagca 
     601 tttcatcaca tggcccgaga gaagcatccg gagtactaca aggactgctg a
//
last modified: Tue May 31 10:56 2022


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