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LOCUS JX440969 651 bp RNA linear VRL 30-JAN-2013
DEFINITION HIV-1 isolate CP_99 from USA nef protein gene, complete cds
ACCESSION JX440969
VERSION JX440969.1 GI:443900555
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 651)
Show all sequences for reference 1
AUTHORS Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
Brumme,Z.L., Brockman,M.A. and Ueno,T.
TITLE Attenuation of multiple Nef functions in HIV-1 elite controllers
JOURNAL Retrovirology 10 (1), 1 (2013)
PUBMED 23289738
REFERENCE 2 (bases 1 to 651)
Show all sequences for reference 2
AUTHORS Mwimanzi,P.M.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE 3
Show all sequences for reference 3
AUTHORS Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
TITLE Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
HIV-1 Entry Receptors.
JOURNAL J. Virol.. 89(18); 9639-52 (2015)
PUBMED 26178998
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..651
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CP_99"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
CDS 1..651
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AGD79233.1"
/db_xref="GI:443900556"
/translation="MGGKWSKRLREWPAVRERMQRAEPRERRQRARAEPAAEGVGAVS
RDLAQRGAITSSNTPATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLK
EKGGLEGLIYSQRRQDILDLWIYNTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPIEQ
EDVEKATERENTLLLHPISLHGMDDPEGEVLMWKFDSRLAFHHMAREKHPEYYKDC"
BASE COUNT 204 a 135 c 184 g 128 t
ORIGIN
1 atgggtggca agtggtcaaa acgcttgagg gaatggcctg ctgtaaggga aagaatgcaa
61 cgagccgagc caagggaaag aaggcaaaga gctagagctg agccagcagc agaaggggtg
121 ggagcagtat ctcgagactt ggcacaacgc ggagcaatta caagtagcaa tacaccagct
181 actaatgctg attgtgcctg gctagaagca caagaggagg aggaagtggg tttcccagtc
241 agacctcagg tacctttaag acctatgact tacaaaggag ctctggattt gagccacttt
301 ttaaaagaaa aggggggact ggaagggtta atttactccc aaagaagaca agatatcctt
361 gatctgtgga tctacaacac acaaggctac ttccctgatt ggcagaacta cactccaggg
421 ccaggggtca gatacccact gacctttgga tggtgcttca agctggtacc aattgagcaa
481 gaggatgtag aaaaggccac tgaaagagag aacaccctac tgttacatcc tataagcctg
541 catgggatgg atgacccaga gggagaagta ttaatgtgga agtttgacag tcgcctagca
601 tttcatcaca tggcccgaga gaagcatccg gagtactaca aggactgctg a
//
last modified: Tue May 31 10:56 2022