View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JX440939 636 bp RNA linear VRL 30-JAN-2013
DEFINITION HIV-1 isolate CP_66 from USA nef protein gene, complete cds
ACCESSION JX440939
VERSION JX440939.1 GI:443900495
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 636)
Show all sequences for reference 1
AUTHORS Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
Brumme,Z.L., Brockman,M.A. and Ueno,T.
TITLE Attenuation of multiple Nef functions in HIV-1 elite controllers
JOURNAL Retrovirology 10 (1), 1 (2013)
PUBMED 23289738
REFERENCE 2 (bases 1 to 636)
Show all sequences for reference 2
AUTHORS Mwimanzi,P.M.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE 3
Show all sequences for reference 3
AUTHORS Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
TITLE Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
HIV-1 Entry Receptors.
JOURNAL J. Virol.. 89(18); 9639-52 (2015)
PUBMED 26178998
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..636
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CP_66"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
CDS 1..636
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AGD79203.1"
/db_xref="GI:443900496"
/translation="MGGKWSKSSIVGWSTVRERIRRTEPRTEPAAEGVGAVSRDLEKH
GAITSSNTPANNAACAWLEAQQEEEEVGFPVRPQVPLRPMTYQAAVDLSHFLRKEGGL
EGLIYSQQRQDILDLWVYNTQGYFPDWQNYTTGPGVRYPLTFGWCFKLVPMEPEKVEE
ANEGENNNLLHPLSQHGMDDPEKEVLTWRFDSRLAFHHMARELHPEHYKNC"
BASE COUNT 200 a 134 c 177 g 125 t
ORIGIN
1 atgggtggta agtggtcaaa aagcagtata gttggatggt ctactgtaag ggagagaata
61 agacgaactg agccacgaac tgagccagca gcagaagggg taggagcagt gtctcgagat
121 ctggaaaaac atggagcaat cacaagtagc aatacaccag ctaacaatgc tgcttgtgcc
181 tggctagagg cacaacaaga ggaggaggag gtgggttttc cagtcagacc tcaggtacct
241 ttaagaccaa tgacttacca ggcagctgtg gatcttagcc actttttaag aaaagagggg
301 ggactggaag ggctaattta ctcccaacaa agacaagaca tccttgatct gtgggtttac
361 aacacacaag gctacttccc tgattggcag aactacacaa cagggccagg ggtcagatat
421 cccctgacct ttggatggtg cttcaagcta gtaccaatgg agccagagaa ggtagaagag
481 gccaatgaag gagagaacaa taacttgtta caccctctga gccagcatgg gatggatgac
541 ccagagaaag aagtgttaac atggaggttt gacagccgcc tagcatttca tcacatggcc
601 cgagagctgc atccggagca ctacaagaac tgctga
//
last modified: Tue May 31 10:56 2022