HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JX440939		     636 bp    RNA     linear	VRL 30-JAN-2013
DEFINITION  HIV-1 isolate CP_66 from USA nef protein gene, complete cds
ACCESSION   JX440939
VERSION     JX440939.1 GI:443900495
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 636)
            Show all sequences for reference 1
  AUTHORS   Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
	    Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
	    Brumme,Z.L., Brockman,M.A. and Ueno,T.
  TITLE     Attenuation of multiple Nef functions in HIV-1 elite controllers
  JOURNAL   Retrovirology 10 (1), 1 (2013)
  PUBMED    23289738
REFERENCE   2 (bases 1 to 636)
            Show all sequences for reference 2
  AUTHORS   Mwimanzi,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2012) Faculty of Health Sciences, Simon Fraser
	    University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
	    Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
  TITLE     Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
	    HIV-1 Entry Receptors.
  JOURNAL   J. Virol.. 89(18); 9639-52 (2015)
  PUBMED    26178998
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. 9.2
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..636
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CP_66"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     CDS	     1..636
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AGD79203.1"
		     /db_xref="GI:443900496"
		     /translation="MGGKWSKSSIVGWSTVRERIRRTEPRTEPAAEGVGAVSRDLEKH
		     GAITSSNTPANNAACAWLEAQQEEEEVGFPVRPQVPLRPMTYQAAVDLSHFLRKEGGL
		     EGLIYSQQRQDILDLWVYNTQGYFPDWQNYTTGPGVRYPLTFGWCFKLVPMEPEKVEE
		     ANEGENNNLLHPLSQHGMDDPEKEVLTWRFDSRLAFHHMARELHPEHYKNC"
BASE COUNT	200 a	 134 c	  177 g    125 t
ORIGIN
       1 atgggtggta agtggtcaaa aagcagtata gttggatggt ctactgtaag ggagagaata 
      61 agacgaactg agccacgaac tgagccagca gcagaagggg taggagcagt gtctcgagat 
     121 ctggaaaaac atggagcaat cacaagtagc aatacaccag ctaacaatgc tgcttgtgcc 
     181 tggctagagg cacaacaaga ggaggaggag gtgggttttc cagtcagacc tcaggtacct 
     241 ttaagaccaa tgacttacca ggcagctgtg gatcttagcc actttttaag aaaagagggg 
     301 ggactggaag ggctaattta ctcccaacaa agacaagaca tccttgatct gtgggtttac 
     361 aacacacaag gctacttccc tgattggcag aactacacaa cagggccagg ggtcagatat 
     421 cccctgacct ttggatggtg cttcaagcta gtaccaatgg agccagagaa ggtagaagag 
     481 gccaatgaag gagagaacaa taacttgtta caccctctga gccagcatgg gatggatgac 
     541 ccagagaaag aagtgttaac atggaggttt gacagccgcc tagcatttca tcacatggcc 
     601 cgagagctgc atccggagca ctacaagaac tgctga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health