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LOCUS	    JX202874		    4416 bp    RNA     linear	VRL 16-JAN-2013
DEFINITION  HIV-1 isolate 0B191845_5_C8 from Uganda gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   JX202874
VERSION     JX202874.1 GI:441442566
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4416)
            Show all sequences for reference 1
  AUTHORS   Baalwa,J., Wang,S., Parrish,N.F., Decker,J.M., Keele,B.F.,
	    Learn,G.H., Yue,L., Ruzagira,E., Ssemwanga,D., Kamali,A.,
	    Amornkul,P.N., Price,M.A., Kappes,J.C., Karita,E., Kaleebu,P.,
	    Sanders,E., Gilmour,J., Allen,S., Hunter,E., Montefiori,D.C.,
	    Haynes,B.F., Cormier,E., Hahn,B.H. and Shaw,G.M.
  TITLE     Molecular identification, cloning and characterization of
	    transmitted/founder HIV-1 subtype A, D and A/D infectious molecular
	    clones
  JOURNAL   Virology 436 (1), 33-48 (2013)
  PUBMED    23123038
REFERENCE   2 (bases 1 to 4416)
            Show all sequences for reference 2
  AUTHORS   Shaw,G., Baalwa,J., Wang,S., Parrish,N., Decker,J., Keele,B.,
	    Ruzagira,E., Ssemwanga,D., Kaleebu,P., Kamali,A., Kappes,J.,
	    Cormier,E., Gilmour,J., Fast,P. and Hahn,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUN-2012) Medicine, University of Pennsylvania, 409
	    Johnson Pavilion 3610 Hamilton Walk, Philadelphia, PA 19104-6076,
	    USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv-1.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 0B191845 Patient sex Female
	    Fiebig stage IV Viral load 31200 Sample tissue Plasma Risk factor
	    Heterosexual ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..4416
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="0B191845_5_C8"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="05-Apr-2007"
		     /note="IAVI-CHAVI; subtype: A"
     gene	     170..1669
		     /gene="gag"
     CDS	     170..1669
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AGC32176.1"
		     /db_xref="GI:441442567"
		     /translation="MGARASVLSGGKLDAWEKIRLRPGGKKQYKLKHIVWASRELERF
		     ALNPSLLETAEGCQQIIDQLQPALKTGTEDLRSLFNTIATLYCVHQRIEVKDTKEALD
		     KIEELQKKNKQKTQQVAADTGNSSKVSQNYPIVQNAQGQMIHQSISPRTLNAWVKVIE
		     EKAFSPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPV
		     HAGPIPPGQMREPRGSDIAGTTSTPQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRM
		     YSPVSILDIKQGPKEPFRDYVDRFFKCLRAEQATQEVKGWMTETLLIQNANPDCKSIL
		     RALGTGATLEEMMTACQGVGGPGHKARVLAEAMSQVQNANIMMQKGNFRGQRRIKCFN
		     CGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQNR
		     LEPTAPPAEIFAMGEEITSPLKQEQKGKEQAPTPSISLKSLFGNDLLSQ"
     gene	     <1459..>4416
		     /gene="pol"
     CDS	     <1459..>4416
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGC32177.1"
		     /db_xref="GI:441442568"
		     /translation="FFRENLAFQQGEARKFSPEQAGTNSPTSRDLCDGGRDNLPSEAG
		     AERQGTSPNTLNLPQITLWQRPLVTVRIGGQLREALLDTGADDTVLEDIDLPGRWKPK
		     MIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISP
		     IETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFA
		     IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
		     DESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPDI
		     IIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHP
		     DKWTVQPIKLPEKEHWTVNDIQKLVGKLNWASQIYPGVKVKQLCKLLRGAKVLTDIVT
		     LTEEAELELAENREILKDPVHGVYYDPSKELIAEIQKQGQDQWTYQIYQEPFKNLKTG
		     KYARRRSTHTNDVRQLAEVVQKVVMESIVIWGKTPRFKLPIQKETWDTWWMDYWQATW
		     IPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVIS
		     ITETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLI
		     QKDKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDRAQEEHEKYHSNWRAMAS
		     DFNLPPIVAKEIVAQCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVIIVAVHVASG
		     YIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSAAVKAACWWADVQQEFG
		     IPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAVLIHNFKRKGGIGGYSAGE
		     RIIDIIATDIQTKELQKHITKISNFRVYYRESRDPLWKGPAKLLWKGEGAVVIQDNSD
		     IKVVPRRKVKIIRD"
BASE COUNT     1721 a	 765 c	 1021 g    909 t
ORIGIN
       1 cgcccgaaca gggactttaa aagcgaaagt aacagggact cgaaagcgga agttccagag 
      61 aagatctctc gacgcaggac tcggcttgct gaggtgcaca cagcaagagg cgagagcggc 
     121 gactggtgag tacgccaatt tttaactagc ggaggctaga aggagagaga tgggtgcgag 
     181 agcgtcagta ttaagtgggg gaaaattaga tgcatgggag aaaattcggt taaggccagg 
     241 gggaaagaaa caatataaac taaaacatat agtatgggca agcagggagc tggaaagatt 
     301 tgcacttaac cctagccttt tagaaacagc agaaggatgt cagcaaataa tagatcagtt 
     361 acaaccagct ctcaagacag gaacagaaga ccttagatca ttatttaata caatagcaac 
     421 cctctattgt gtacatcaaa gaatagaagt aaaagacacc aaagaagctc tagataaaat 
     481 agaggaattg caaaagaaaa acaagcaaaa gacacaacag gtagcagctg atacaggaaa 
     541 cagcagcaag gtcagccaaa attaccctat agtacaaaat gcacaagggc aaatgataca 
     601 ccagtccata tcacctagga ctttgaatgc atgggtaaaa gtaatagaag aaaaggcttt 
     661 cagcccagaa gtaataccca tgttctcagc attatcagaa ggagccactc cacaagattt 
     721 aaatatgatg ctgaacatag tggggggaca ccaggcagct atgcaaatgt taaaagatac 
     781 catcaatgag gaagctgcag aatgggacag gttacatcca gtacatgcag ggcctattcc 
     841 accaggccag atgagagaac caaggggaag tgacatagca gggactacta gtacccctca 
     901 agaacaaata ggatggatga caagcaatcc acctatccca gtgggagaca tctataaaag 
     961 atggataatc ctgggattaa ataaaatagt aagaatgtat agccctgtta gcattttgga 
    1021 tataaaacaa gggccaaaag aaccctttag agattatgta gatagattct ttaaatgtct 
    1081 cagagctgag caagctacgc aggaagtaaa aggttggatg acagaaacat tactgatcca 
    1141 aaatgcaaat ccagattgta agtccatctt aagagcatta ggaacaggag ctacattaga 
    1201 agaaatgatg acagcatgcc agggagtggg aggacccggc cataaagcaa gggttttggc 
    1261 tgaggcaatg agccaagtac aaaatgccaa cataatgatg caaaaaggca actttagggg 
    1321 ccagagaagg attaagtgtt tcaactgtgg caaagaagga cacctagcca gaaattgcag 
    1381 ggcccctagg aaaaagggct gttggaaatg tggaaaggag ggacatcaaa tgaaagactg 
    1441 cactgaaaga caggctaatt ttttagggaa aatctggcct tccaacaagg ggaggccagg 
    1501 aaattttccc cagaacaggc tggaaccaac agccccacca gcagagatct ttgcgatggg 
    1561 ggaagagata acctcccctc tgaagcagga gcagaaaggc aaggaacaag ccccaacacc 
    1621 ctcaatctcc ctcaaatcac tctttggcaa cgacctcttg tcacagtaag aataggggga 
    1681 cagctaagag aagctctatt agatacagga gcagatgata cagtattaga agacatagat 
    1741 ttaccaggaa gatggaagcc aaaaatgata gggggaattg gaggtttcat taaggtaaaa 
    1801 cagtatgatc aaatactcat agaaatttgt ggaaaaaagg ctataggtac agtattagta 
    1861 ggacctacac ctgtcaacat aattggaaga aacatgttga cccagattgg ttgtacttta 
    1921 aatttcccaa ttagtcctat tgagactgta ccagtaaaac taaagccagg aatggatggc 
    1981 ccaaaggtta aacaatggcc attgacagaa gaaaaaataa aagcattaac agaaatttgt 
    2041 acagagatgg aaaaggaagg aaaaatttca aaaattgggc ctgagaaccc atacaatact 
    2101 ccaatatttg caataaaaaa aaaagatagc actaagtgga gaaaattagt agatttcaga 
    2161 gagctcaata aaagaacaca agacttttgg gaagttcaat tgggaatacc acatccagca 
    2221 ggcttaaaaa agaaaaaatc agtaacagta ctggatgtgg gagacgcata tttttcagtt 
    2281 cctttagatg aaagctttag aaaatatact gcgttcacca tacctagtac aaacaatgag 
    2341 acaccaggaa taaggtatca atacaatgtg cttccacagg ggtggaaagg atcaccagca 
    2401 atattccaga gtagcatgac aaaaatctta gagcccttta gatcaaaaaa tccagacata 
    2461 attatctatc aatacatgga tgatttatat gtaggatctg atttagaaat agggcagcat 
    2521 agagcaaaaa tagaagaatt aagggctcat ctattgagct ggggattcac tacaccagac 
    2581 aaaaagcacc agaaagaacc tccattcctt tggatgggat atgagctcca tcctgacaag 
    2641 tggacagtcc agcctataaa gctgccagaa aaagaacact ggactgtcaa tgatatacag 
    2701 aaattagtag ggaaactaaa ttgggccagt caaatttatc caggggttaa agtaaaacaa 
    2761 ttgtgtaaac ttctcagggg agccaaagta ctaacagata tagtaacatt aactgaggaa 
    2821 gcagaattag agttggcaga gaacagggag attctaaagg accctgtgca tggggtatat 
    2881 tatgacccat caaaagaatt aatagcagaa atacagaaac aagggcaaga ccaatggaca 
    2941 taccaaattt atcaagagcc atttaagaac ctaaaaacag gaaaatatgc aagaagaagg 
    3001 tctactcaca caaatgatgt aagacaatta gcagaagtgg tgcaaaaggt ggtcatggaa 
    3061 agcatagtaa tatggggaaa gactcctaga tttaaattac ccatacaaaa agaaacatgg 
    3121 gacacatggt ggatggacta ttggcaggct acctggattc ctgaatggga atttgtcaat 
    3181 acccctcccc tagtaaaatt gtggtaccaa ttagaaaaag accccatagt aggagcagag 
    3241 actttctatg tagatggggc agccaatagg gagactaaac taggaaaagc agggtatgtc 
    3301 actgacaggg gaagacaaaa ggttatttcc ataactgaga caacaaatca aaagactgaa 
    3361 ctacatgcaa tccatctagc cttgcaggat tcaggatcag aagtaaacat agtaacagat 
    3421 tcacagtatg cattaggaat cattcaggca caaccagaca ggagtgaatc agagttagtc 
    3481 aatcaaataa tagagaagct aatacaaaag gacaaagtct acctatcatg ggtaccagca 
    3541 cacaaaggaa ttggaggaaa tgaacaagta gataaattag tcagttcagg aatcaggaag 
    3601 gtactgtttt tagatgggat agatagagct caagaagaac atgaaaaata tcatagcaat 
    3661 tggagagcaa tggctagtga ctttaatcta ccacctatag tagcaaaaga aatagtagcc 
    3721 caatgtgata aatgtcagct aaaaggggaa gccatgcatg gacaagtaga ctgcagtcca 
    3781 gggatatggc aattagactg tacacatcta gaaggaaaag taattatagt agcagttcat 
    3841 gtagccagtg gctatataga agcagaagtt atcccagcag aaacaggaca agagacagca 
    3901 tactttatac taaaattagc aggaagatgg ccagtaaaag taatacacac agacaatggc 
    3961 agtaatttca ctagcgctgc agttaaagca gcttgttggt gggcagatgt tcaacaggaa 
    4021 tttgggattc cctacaatcc ccaaagtcaa ggagtagtgg aatccatgaa taaggaatta 
    4081 aagaaaatca taacacaggt aagagatcaa gcagaacacc ttaaaacagc agtacaaatg 
    4141 gcagtactca ttcacaattt taaaagaaaa ggggggattg gggggtacag tgcaggggaa 
    4201 agaataatag acataatagc aacagacata caaactaaag aattacaaaa acacattaca 
    4261 aaaatttcaa attttcgggt ttattacagg gaaagcagag atccactttg gaaaggacca 
    4321 gcaaaactac tttggaaagg tgaaggggca gtagtaatac aggacaatag tgatataaag 
    4381 gtagtaccaa gaagaaaggt aaaaatcatc agggat
//
last modified: Tue May 31 10:56 2022


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