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LOCUS JX202874 4416 bp RNA linear VRL 16-JAN-2013
DEFINITION HIV-1 isolate 0B191845_5_C8 from Uganda gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION JX202874
VERSION JX202874.1 GI:441442566
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4416)
Show all sequences for reference 1
AUTHORS Baalwa,J., Wang,S., Parrish,N.F., Decker,J.M., Keele,B.F.,
Learn,G.H., Yue,L., Ruzagira,E., Ssemwanga,D., Kamali,A.,
Amornkul,P.N., Price,M.A., Kappes,J.C., Karita,E., Kaleebu,P.,
Sanders,E., Gilmour,J., Allen,S., Hunter,E., Montefiori,D.C.,
Haynes,B.F., Cormier,E., Hahn,B.H. and Shaw,G.M.
TITLE Molecular identification, cloning and characterization of
transmitted/founder HIV-1 subtype A, D and A/D infectious molecular
clones
JOURNAL Virology 436 (1), 33-48 (2013)
PUBMED 23123038
REFERENCE 2 (bases 1 to 4416)
Show all sequences for reference 2
AUTHORS Shaw,G., Baalwa,J., Wang,S., Parrish,N., Decker,J., Keele,B.,
Ruzagira,E., Ssemwanga,D., Kaleebu,P., Kamali,A., Kappes,J.,
Cormier,E., Gilmour,J., Fast,P. and Hahn,B.
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2012) Medicine, University of Pennsylvania, 409
Johnson Pavilion 3610 Hamilton Walk, Philadelphia, PA 19104-6076,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV-1 Database at Los Alamos (hiv-1.lanl.gov).;
##HIVDataBaseData-START## Patient code 0B191845 Patient sex Female
Fiebig stage IV Viral load 31200 Sample tissue Plasma Risk factor
Heterosexual ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..4416
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="0B191845_5_C8"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="05-Apr-2007"
/note="IAVI-CHAVI; subtype: A"
gene 170..1669
/gene="gag"
CDS 170..1669
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AGC32176.1"
/db_xref="GI:441442567"
/translation="MGARASVLSGGKLDAWEKIRLRPGGKKQYKLKHIVWASRELERF
ALNPSLLETAEGCQQIIDQLQPALKTGTEDLRSLFNTIATLYCVHQRIEVKDTKEALD
KIEELQKKNKQKTQQVAADTGNSSKVSQNYPIVQNAQGQMIHQSISPRTLNAWVKVIE
EKAFSPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRLHPV
HAGPIPPGQMREPRGSDIAGTTSTPQEQIGWMTSNPPIPVGDIYKRWIILGLNKIVRM
YSPVSILDIKQGPKEPFRDYVDRFFKCLRAEQATQEVKGWMTETLLIQNANPDCKSIL
RALGTGATLEEMMTACQGVGGPGHKARVLAEAMSQVQNANIMMQKGNFRGQRRIKCFN
CGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQNR
LEPTAPPAEIFAMGEEITSPLKQEQKGKEQAPTPSISLKSLFGNDLLSQ"
gene <1459..>4416
/gene="pol"
CDS <1459..>4416
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGC32177.1"
/db_xref="GI:441442568"
/translation="FFRENLAFQQGEARKFSPEQAGTNSPTSRDLCDGGRDNLPSEAG
AERQGTSPNTLNLPQITLWQRPLVTVRIGGQLREALLDTGADDTVLEDIDLPGRWKPK
MIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISP
IETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFA
IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
DESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPDI
IIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHP
DKWTVQPIKLPEKEHWTVNDIQKLVGKLNWASQIYPGVKVKQLCKLLRGAKVLTDIVT
LTEEAELELAENREILKDPVHGVYYDPSKELIAEIQKQGQDQWTYQIYQEPFKNLKTG
KYARRRSTHTNDVRQLAEVVQKVVMESIVIWGKTPRFKLPIQKETWDTWWMDYWQATW
IPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVIS
ITETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLI
QKDKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDRAQEEHEKYHSNWRAMAS
DFNLPPIVAKEIVAQCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVIIVAVHVASG
YIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSAAVKAACWWADVQQEFG
IPYNPQSQGVVESMNKELKKIITQVRDQAEHLKTAVQMAVLIHNFKRKGGIGGYSAGE
RIIDIIATDIQTKELQKHITKISNFRVYYRESRDPLWKGPAKLLWKGEGAVVIQDNSD
IKVVPRRKVKIIRD"
BASE COUNT 1721 a 765 c 1021 g 909 t
ORIGIN
1 cgcccgaaca gggactttaa aagcgaaagt aacagggact cgaaagcgga agttccagag
61 aagatctctc gacgcaggac tcggcttgct gaggtgcaca cagcaagagg cgagagcggc
121 gactggtgag tacgccaatt tttaactagc ggaggctaga aggagagaga tgggtgcgag
181 agcgtcagta ttaagtgggg gaaaattaga tgcatgggag aaaattcggt taaggccagg
241 gggaaagaaa caatataaac taaaacatat agtatgggca agcagggagc tggaaagatt
301 tgcacttaac cctagccttt tagaaacagc agaaggatgt cagcaaataa tagatcagtt
361 acaaccagct ctcaagacag gaacagaaga ccttagatca ttatttaata caatagcaac
421 cctctattgt gtacatcaaa gaatagaagt aaaagacacc aaagaagctc tagataaaat
481 agaggaattg caaaagaaaa acaagcaaaa gacacaacag gtagcagctg atacaggaaa
541 cagcagcaag gtcagccaaa attaccctat agtacaaaat gcacaagggc aaatgataca
601 ccagtccata tcacctagga ctttgaatgc atgggtaaaa gtaatagaag aaaaggcttt
661 cagcccagaa gtaataccca tgttctcagc attatcagaa ggagccactc cacaagattt
721 aaatatgatg ctgaacatag tggggggaca ccaggcagct atgcaaatgt taaaagatac
781 catcaatgag gaagctgcag aatgggacag gttacatcca gtacatgcag ggcctattcc
841 accaggccag atgagagaac caaggggaag tgacatagca gggactacta gtacccctca
901 agaacaaata ggatggatga caagcaatcc acctatccca gtgggagaca tctataaaag
961 atggataatc ctgggattaa ataaaatagt aagaatgtat agccctgtta gcattttgga
1021 tataaaacaa gggccaaaag aaccctttag agattatgta gatagattct ttaaatgtct
1081 cagagctgag caagctacgc aggaagtaaa aggttggatg acagaaacat tactgatcca
1141 aaatgcaaat ccagattgta agtccatctt aagagcatta ggaacaggag ctacattaga
1201 agaaatgatg acagcatgcc agggagtggg aggacccggc cataaagcaa gggttttggc
1261 tgaggcaatg agccaagtac aaaatgccaa cataatgatg caaaaaggca actttagggg
1321 ccagagaagg attaagtgtt tcaactgtgg caaagaagga cacctagcca gaaattgcag
1381 ggcccctagg aaaaagggct gttggaaatg tggaaaggag ggacatcaaa tgaaagactg
1441 cactgaaaga caggctaatt ttttagggaa aatctggcct tccaacaagg ggaggccagg
1501 aaattttccc cagaacaggc tggaaccaac agccccacca gcagagatct ttgcgatggg
1561 ggaagagata acctcccctc tgaagcagga gcagaaaggc aaggaacaag ccccaacacc
1621 ctcaatctcc ctcaaatcac tctttggcaa cgacctcttg tcacagtaag aataggggga
1681 cagctaagag aagctctatt agatacagga gcagatgata cagtattaga agacatagat
1741 ttaccaggaa gatggaagcc aaaaatgata gggggaattg gaggtttcat taaggtaaaa
1801 cagtatgatc aaatactcat agaaatttgt ggaaaaaagg ctataggtac agtattagta
1861 ggacctacac ctgtcaacat aattggaaga aacatgttga cccagattgg ttgtacttta
1921 aatttcccaa ttagtcctat tgagactgta ccagtaaaac taaagccagg aatggatggc
1981 ccaaaggtta aacaatggcc attgacagaa gaaaaaataa aagcattaac agaaatttgt
2041 acagagatgg aaaaggaagg aaaaatttca aaaattgggc ctgagaaccc atacaatact
2101 ccaatatttg caataaaaaa aaaagatagc actaagtgga gaaaattagt agatttcaga
2161 gagctcaata aaagaacaca agacttttgg gaagttcaat tgggaatacc acatccagca
2221 ggcttaaaaa agaaaaaatc agtaacagta ctggatgtgg gagacgcata tttttcagtt
2281 cctttagatg aaagctttag aaaatatact gcgttcacca tacctagtac aaacaatgag
2341 acaccaggaa taaggtatca atacaatgtg cttccacagg ggtggaaagg atcaccagca
2401 atattccaga gtagcatgac aaaaatctta gagcccttta gatcaaaaaa tccagacata
2461 attatctatc aatacatgga tgatttatat gtaggatctg atttagaaat agggcagcat
2521 agagcaaaaa tagaagaatt aagggctcat ctattgagct ggggattcac tacaccagac
2581 aaaaagcacc agaaagaacc tccattcctt tggatgggat atgagctcca tcctgacaag
2641 tggacagtcc agcctataaa gctgccagaa aaagaacact ggactgtcaa tgatatacag
2701 aaattagtag ggaaactaaa ttgggccagt caaatttatc caggggttaa agtaaaacaa
2761 ttgtgtaaac ttctcagggg agccaaagta ctaacagata tagtaacatt aactgaggaa
2821 gcagaattag agttggcaga gaacagggag attctaaagg accctgtgca tggggtatat
2881 tatgacccat caaaagaatt aatagcagaa atacagaaac aagggcaaga ccaatggaca
2941 taccaaattt atcaagagcc atttaagaac ctaaaaacag gaaaatatgc aagaagaagg
3001 tctactcaca caaatgatgt aagacaatta gcagaagtgg tgcaaaaggt ggtcatggaa
3061 agcatagtaa tatggggaaa gactcctaga tttaaattac ccatacaaaa agaaacatgg
3121 gacacatggt ggatggacta ttggcaggct acctggattc ctgaatggga atttgtcaat
3181 acccctcccc tagtaaaatt gtggtaccaa ttagaaaaag accccatagt aggagcagag
3241 actttctatg tagatggggc agccaatagg gagactaaac taggaaaagc agggtatgtc
3301 actgacaggg gaagacaaaa ggttatttcc ataactgaga caacaaatca aaagactgaa
3361 ctacatgcaa tccatctagc cttgcaggat tcaggatcag aagtaaacat agtaacagat
3421 tcacagtatg cattaggaat cattcaggca caaccagaca ggagtgaatc agagttagtc
3481 aatcaaataa tagagaagct aatacaaaag gacaaagtct acctatcatg ggtaccagca
3541 cacaaaggaa ttggaggaaa tgaacaagta gataaattag tcagttcagg aatcaggaag
3601 gtactgtttt tagatgggat agatagagct caagaagaac atgaaaaata tcatagcaat
3661 tggagagcaa tggctagtga ctttaatcta ccacctatag tagcaaaaga aatagtagcc
3721 caatgtgata aatgtcagct aaaaggggaa gccatgcatg gacaagtaga ctgcagtcca
3781 gggatatggc aattagactg tacacatcta gaaggaaaag taattatagt agcagttcat
3841 gtagccagtg gctatataga agcagaagtt atcccagcag aaacaggaca agagacagca
3901 tactttatac taaaattagc aggaagatgg ccagtaaaag taatacacac agacaatggc
3961 agtaatttca ctagcgctgc agttaaagca gcttgttggt gggcagatgt tcaacaggaa
4021 tttgggattc cctacaatcc ccaaagtcaa ggagtagtgg aatccatgaa taaggaatta
4081 aagaaaatca taacacaggt aagagatcaa gcagaacacc ttaaaacagc agtacaaatg
4141 gcagtactca ttcacaattt taaaagaaaa ggggggattg gggggtacag tgcaggggaa
4201 agaataatag acataatagc aacagacata caaactaaag aattacaaaa acacattaca
4261 aaaatttcaa attttcgggt ttattacagg gaaagcagag atccactttg gaaaggacca
4321 gcaaaactac tttggaaagg tgaaggggca gtagtaatac aggacaatag tgatataaag
4381 gtagtaccaa gaagaaaggt aaaaatcatc agggat
//
last modified: Tue May 31 10:56 2022