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LOCUS JX202843 4359 bp RNA linear VRL 16-JAN-2013
DEFINITION HIV-1 isolate 0B191727_5_C7 from Uganda gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION JX202843
VERSION JX202843.1 GI:441442478
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4359)
Show all sequences for reference 1
AUTHORS Baalwa,J., Wang,S., Parrish,N.F., Decker,J.M., Keele,B.F.,
Learn,G.H., Yue,L., Ruzagira,E., Ssemwanga,D., Kamali,A.,
Amornkul,P.N., Price,M.A., Kappes,J.C., Karita,E., Kaleebu,P.,
Sanders,E., Gilmour,J., Allen,S., Hunter,E., Montefiori,D.C.,
Haynes,B.F., Cormier,E., Hahn,B.H. and Shaw,G.M.
TITLE Molecular identification, cloning and characterization of
transmitted/founder HIV-1 subtype A, D and A/D infectious molecular
clones
JOURNAL Virology 436 (1), 33-48 (2013)
PUBMED 23123038
REFERENCE 2 (bases 1 to 4359)
Show all sequences for reference 2
AUTHORS Shaw,G., Baalwa,J., Wang,S., Parrish,N., Decker,J., Keele,B.,
Ruzagira,E., Ssemwanga,D., Kaleebu,P., Kamali,A., Kappes,J.,
Cormier,E., Gilmour,J., Fast,P. and Hahn,B.
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2012) Medicine, University of Pennsylvania, 409
Johnson Pavilion 3610 Hamilton Walk, Philadelphia, PA 19104-6076,
USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV-1 Database at Los Alamos (hiv-1.lanl.gov).;
##HIVDataBaseData-START## Patient code 0B191727 Patient sex Female
Fiebig stage IV Viral load 15200 Sample tissue Plasma Risk factor
Heterosexual ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..4359
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="0B191727_5_C7"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="24-Jan-2007"
/note="IAVI-CHAVI; subtype: D"
gene 149..1648
/gene="gag"
CDS 149..1648
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AGC32119.1"
/db_xref="GI:441442479"
/translation="MGARASVLSGGQLDEWEKIRLRPGGSKKYKLKHIVWASRELERF
ALNPGLLETSGGCKQIMKQLQPAIQTGSEELKSLFNTVATLYCVHEKIKVADTKEALD
KIEEEQTKSKEKAQQAADTRNSSQVSQNYPIVQNMQGQMVHQALTPRTLNAWVKVIEE
KNFSPEVIPMFSALSEGATPTDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRTHPVH
AGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMY
SPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILK
SLGPGATLEEMMTACQGVGGPGHKARVLAEAMSQLSGTNASVMMQRGNFKGPKRNIKC
FNCGKEGHTAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKFWPSHKGRPGNFLQ
SRPEPSAPPAEIFGFGEEMTLPQKQEQKDKETCPLASLKSLFGNDPSSQ"
gene <1444..>4359
/gene="pol"
CDS <1444..>4359
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AGC32120.1"
/db_xref="GI:441442480"
/translation="FFREILAFPQGKARELPSEQTGAISSTSRDFRVWGGNDTPSETG
AKGQGDVSLSLPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEINLPGKWKPRMI
GGIGGFIKVKQYEQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIE
TVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIFAIK
KKDSSKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDK
DFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKKNPEVII
YQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDK
WTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKCIRGTKALTEVVPLT
KEAELELEENREILKEPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEQYKNLKTGKY
AKTRGTHTNDVKQLTEAVQKIAYECIVIWGKTPKFRLPIQKETWETWWTDYWQATWIP
EWEYVNTPPLVKLWYQLEKEPIIGVETFYVDGAANRETKLGKAGYVTDRGRQKVVSLT
DTTNQKTELQAINLALQDSGLEVNIITDSQYALGIIQAQPDKSESELVNQIIEQLIKK
EKVYLSWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHNNWRARASDF
NLPPVVAKEIVASCDKGQLKGEALHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYI
EAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSNFTSNAVKAACWWAGIKQEFGIP
YNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERI
IDIIASEIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSEIK
"
BASE COUNT 1689 a 743 c 1019 g 908 t
ORIGIN
1 ccgaacaggg acttgaaagc gaaagtagaa ccagaggagc tctctcgacg caggactcgg
61 cttgctgaag cgcgcacagc aagaggcgag gggcagcgaa cggtgagtac gctgaaattt
121 ttgactagcg gaggctagaa ggagagagat gggtgcgaga gcgtcagtat taagcggggg
181 tcaattagat gagtgggaga aaattcggtt acggccaggg ggaagcaaaa aatataaact
241 aaaacatata gtatgggcaa gcagggagct agaacgattt gcacttaatc ctggcctatt
301 agaaacatca ggaggctgta aacaaataat gaaacagtta caaccagcta ttcagacagg
361 atcagaggag cttaaatcat tatttaatac agtggcaacc ctctattgtg tacatgaaaa
421 gataaaggta gcagacacca aggaagcttt agacaagata gaggaagaac aaaccaaaag
481 taaggaaaaa gcacagcaag cagctgacac aagaaacagc agccaggtca gccaaaatta
541 ccctatagtg caaaacatgc aggggcaaat ggtacaccag gccctaacac ctagaacttt
601 gaacgcgtgg gtaaaagtaa tagaggagaa gaatttcagc ccagaagtga tacccatgtt
661 ttcagcacta tcagaaggag ccaccccaac tgatttaaac accatgctaa acacagtggg
721 gggacatcaa gcagccatgc aaatgttaaa agagaccatc aatgaggaag ctgcagaatg
781 ggataggaca catccagtgc atgcaggacc tgttgcacca ggccaaatga gagaaccaag
841 gggaagtgat atagcaggaa ctactagtac ccttcaggaa caaatagcat ggatgacatc
901 taatccacct ataccagtag gagaaatcta taaaagatgg ataatcctag gattaaataa
961 aatagtaagg atgtatagcc ctgtcagcat tttggacata agacaaggac caaaggagcc
1021 ttttagagac tatgtagatc ggttctataa aactctaaga gccgagcaag cttcacaaga
1081 tgtaaaaaat tggatgactg aaaccttgtt ggtccaaaat gcgaacccag attgtaaaac
1141 tatcttaaaa tcattaggac caggggctac attagaagaa atgatgacag catgtcaagg
1201 agtgggggga cctggtcata aagcaagagt tttggctgag gcaatgagcc aactatcagg
1261 tacaaatgct tctgtaatga tgcagagagg caattttaag ggcccaaaga gaaacattaa
1321 gtgtttcaac tgtggcaaag aagggcacac agcaaaaaat tgcagggctc ctagaaaaag
1381 gggctgttgg aaatgtggaa aagaaggaca ccaaatgaaa gattgcactg aaagacaggc
1441 taatttttta gggaaatttt ggccttccca caagggaagg ccagggaact tccttcagag
1501 cagaccggag ccatcagctc caccagcaga gattttcggg tttggggagg aaatgacact
1561 ccctcagaaa caggagcaaa aggacaagga gacgtgtccc ttagcctccc tcaaatcact
1621 ctttggcaac gacccctcgt cacagtaaag atagggggac agctaaagga agctctatta
1681 gatacaggag cagatgatac agtgttagag gaaataaatt tgccaggaaa atggaaacca
1741 agaatgatag ggggaattgg aggttttatc aaagtaaaac agtatgagca aataccagta
1801 gaaatctgtg gacataaagc tataggtaca gtactagtag ggcctacacc tgtcaacata
1861 attggaagaa atttgttgac tcagattggt tgcactttaa attttccaat tagtcctatt
1921 gaaactgtac cagtgaaatt aaagccaggg atggatggcc caaaagttaa acaatggcca
1981 ttgacagaag aaaaaataaa agcactgaca gaaatttgta cagatatgga aaaggaagga
2041 aaaatttcaa gaattgggcc tgaaaatcca tacaatactc caatatttgc cataaagaaa
2101 aaagacagta gtaagtggag aaaattagta gacttcagag aacttaataa gaggactcaa
2161 gacttttggg aagttcaatt aggaatacca catcctgcag ggctaaaaaa gaaaaaatca
2221 gtaacagtac tggatgtggg tgatgcatat ttttcagtcc ccttagataa agactttaga
2281 aaatatactg cattcaccat acctagtata aacaatgaga caccaggaat tagatatcag
2341 tacaatgtgc ttccacaagg atggaaagga tcaccagcaa tattccaaag tagcatgaca
2401 aaaatcttag agccttttag aaagaaaaat ccagaagtga ttatctatca atacatggat
2461 gatttgtatg taggatctga cttagaaata gggcagcata gaacaaagat agaggaatta
2521 agggaacacc tattgaagtg gggattcacc acaccagaca aaaagcatca gaaagaacct
2581 ccatttcttt ggatgggtta tgaactccat cctgataaat ggacagtaca gcctataaaa
2641 ctgccagaaa aagaaagctg gactgtcaat gatatacaga agttagtggg aaaattaaat
2701 tgggcaagcc agatatatcc aggaattaaa gtaaaacaat tatgcaaatg catcagggga
2761 accaaagcat tgacagaagt agtaccactg acaaaagaag cagaattaga actggaagaa
2821 aacagggaaa ttctaaaaga accagtacat ggagtgtatt atgacccatc aaaagactta
2881 atagcagaaa tacagaaaca agggcaagat caatggacat atcaaattta tcaggaacag
2941 tataaaaatc taaaaacagg aaagtatgca aaaacgaggg gtacccacac taatgatgta
3001 aagcaattaa cagaggcagt gcaaaaaata gcctatgaat gcatagtaat atggggaaag
3061 actcctaaat ttaggctacc catacaaaag gaaacatggg aaacatggtg gacagattat
3121 tggcaggcca cctggattcc tgagtgggag tatgtcaata cccctccttt agttaaatta
3181 tggtaccagt tagagaagga acccataata ggagtagaaa ctttctatgt agatggagca
3241 gctaatagag agactaaact aggaaaagca ggatatgtta ctgacagagg aagacagaaa
3301 gttgtctctc taactgacac aacaaatcag aagactgaat tacaagccat taatctagct
3361 ttgcaggatt cgggattaga agtaaacata atcacagact cacaatatgc attaggaatc
3421 attcaagcac aacctgataa gagtgaatca gagttagtca atcaaataat agagcagtta
3481 ataaaaaagg aaaaggtcta cctatcatgg gtaccagcac acaaggggat tggaggaaat
3541 gaacaagtag ataaattagt cagtaatgga atcaggaaaa tactattctt ggatggaata
3601 gataaggcac aagaagaaca tgagaaatac cacaacaatt ggagagcaag ggctagtgat
3661 ttcaacctgc cccctgtggt agcaaaagaa atagtagcca gctgtgataa aggtcagcta
3721 aaaggagaag ccttgcatgg acaagtagac tgtagcccag gaatatggca attagattgt
3781 acacatttag aaggaaaagt tattctggta gcagtccatg tagccagtgg ctatatagaa
3841 gcagaagtta ttccagcaga aacagggcag gaaacagcat actttctctt gaaattagca
3901 ggaagatggc cagtaaaagt agtacataca gataatggca gcaatttcac cagcaatgca
3961 gtaaaggccg cctgttggtg ggcaggcatc aagcaggaat ttggaattcc ctacaatccc
4021 caaagtcaag gagtagtaga atccatgaac aaagaattaa agaaaattat tggacaagta
4081 agagatcaag ctgaacatct taagacagca gtacaaatgg cagtatttgt ccacaatttt
4141 aaaagaaaag gggggattgg ggggtacagt gcaggggaaa gaataataga cataatagca
4201 tcagaaatac aaactaagga attacaaaaa caaatcacaa aaattcaaaa ttttcgggtt
4261 tattacaggg acagcagaga tccaatttgg aaaggaccag caaagcttct ttggaaaggt
4321 gaaggggcag tagtaataca agacaatagt gaaataaag
//
last modified: Tue May 31 10:56 2022