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LOCUS	    JX198789		     867 bp    RNA     linear	VRL 29-JUL-2012
DEFINITION  HIV-1 isolate Pt1_wk16 clone C18 from USA reverse transcriptase
	    (pol) gene, partial cds
ACCESSION   JX198789
VERSION     JX198789.1 GI:397313969
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 867)
            Show all sequences for reference 1
  AUTHORS   Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
	    and Holodniy,M.
  TITLE     Development of elvitegravir resistance and linkage of integrase
	    inhibitor mutations with protease and reverse transcriptase
	    resistance mutations
  JOURNAL   PLoS ONE 7 (7), E40514 (2012)
  PUBMED    22815755
REFERENCE   2 (bases 1 to 867)
            Show all sequences for reference 2
  AUTHORS   Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
	    and Holodniy,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2012) Infectious Diseases, School of Medicine,
	    Stanford University, S-169, 300 Pasteur Drive, Stanford, CA 94305,
	    USA
FEATURES             Location/Qualifiers
     source	     1..867
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Pt1_wk16"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="C18"
		     /country="USA"
		     /collection_date="2006"
     gene	     <1..>867
		     /gene="pol"
     CDS	     <1..>867
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AFO40033.1"
		     /db_xref="GI:397313970"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTAEKIKALVEICEEMEKE
		     GKISKIGPENPYNTPVFAIKKKNSDKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKK
		     KKSVTVLDVGDAYFSVPLDEEFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRKKNPDIIICQYVDDLYVGSDLEIEQHRTKVEELREYLWKWGFFTPD
		     WKHQKEPPFHWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
		     KQLCKLLRGAKAL"
BASE COUNT	334 a	 144 c	  188 g    201 t
ORIGIN
       1 cctattagtc ctattgaaac tgtaccagta aaattaaagc cagggatgga tggtccaaaa 
      61 gttaagcaat ggccattgac agcagaaaaa ataaaggcat tagtcgaaat ttgtgaagaa 
     121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta 
     181 tttgccataa aaaagaagaa cagtgataaa tggagaaaat tagtagattt cagggaactt 
     241 aataagagaa ctcaagactt ctgggaagtt caactaggaa taccacatcc ctcagggtta 
     301 aaaaagaaga agtcagtaac agttctggat gtgggtgatg catatttttc agttccctta 
     361 gatgaagaat tcaggaaata tactgcattt accataccta gtgtaaacaa tgagacacca 
     421 ggagttagat atcagtacaa tgtgcttcca caaggatgga aaggatcacc agcaatattc 
     481 caaagtagca tgacaaaaat cttagagcct tttagaaaga aaaatccaga cataattatc 
     541 tgtcaatacg tggatgactt gtacgtagga tctgacctag aaatagaaca gcatagaaca 
     601 aaagtagagg aactgagaga atatctatgg aagtggggat ttttcacacc agactggaag 
     661 catcagaaag aacctccatt ccattggatg ggttatgaac tccatcctga taaatggaca 
     721 gtacagccta tagtgctgcc agaaaaagac agctggactg tcaatgacat acagaagtta 
     781 gtgggcaaat tgaattgggc aagccagatc tatccaggga ttaaagtaaa gcaattatgt 
     841 aaactcctca ggggggccaa agcacta
//
last modified: Tue May 31 10:56 2022


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