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LOCUS JX198789 867 bp RNA linear VRL 29-JUL-2012
DEFINITION HIV-1 isolate Pt1_wk16 clone C18 from USA reverse transcriptase
(pol) gene, partial cds
ACCESSION JX198789
VERSION JX198789.1 GI:397313969
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 867)
Show all sequences for reference 1
AUTHORS Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
and Holodniy,M.
TITLE Development of elvitegravir resistance and linkage of integrase
inhibitor mutations with protease and reverse transcriptase
resistance mutations
JOURNAL PLoS ONE 7 (7), E40514 (2012)
PUBMED 22815755
REFERENCE 2 (bases 1 to 867)
Show all sequences for reference 2
AUTHORS Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
and Holodniy,M.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2012) Infectious Diseases, School of Medicine,
Stanford University, S-169, 300 Pasteur Drive, Stanford, CA 94305,
USA
FEATURES Location/Qualifiers
source 1..867
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Pt1_wk16"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="C18"
/country="USA"
/collection_date="2006"
gene <1..>867
/gene="pol"
CDS <1..>867
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AFO40033.1"
/db_xref="GI:397313970"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTAEKIKALVEICEEMEKE
GKISKIGPENPYNTPVFAIKKKNSDKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKK
KKSVTVLDVGDAYFSVPLDEEFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRKKNPDIIICQYVDDLYVGSDLEIEQHRTKVEELREYLWKWGFFTPD
WKHQKEPPFHWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
KQLCKLLRGAKAL"
BASE COUNT 334 a 144 c 188 g 201 t
ORIGIN
1 cctattagtc ctattgaaac tgtaccagta aaattaaagc cagggatgga tggtccaaaa
61 gttaagcaat ggccattgac agcagaaaaa ataaaggcat tagtcgaaat ttgtgaagaa
121 atggaaaagg aaggaaaaat ttcaaaaatt gggcctgaaa atccatacaa tactccagta
181 tttgccataa aaaagaagaa cagtgataaa tggagaaaat tagtagattt cagggaactt
241 aataagagaa ctcaagactt ctgggaagtt caactaggaa taccacatcc ctcagggtta
301 aaaaagaaga agtcagtaac agttctggat gtgggtgatg catatttttc agttccctta
361 gatgaagaat tcaggaaata tactgcattt accataccta gtgtaaacaa tgagacacca
421 ggagttagat atcagtacaa tgtgcttcca caaggatgga aaggatcacc agcaatattc
481 caaagtagca tgacaaaaat cttagagcct tttagaaaga aaaatccaga cataattatc
541 tgtcaatacg tggatgactt gtacgtagga tctgacctag aaatagaaca gcatagaaca
601 aaagtagagg aactgagaga atatctatgg aagtggggat ttttcacacc agactggaag
661 catcagaaag aacctccatt ccattggatg ggttatgaac tccatcctga taaatggaca
721 gtacagccta tagtgctgcc agaaaaagac agctggactg tcaatgacat acagaagtta
781 gtgggcaaat tgaattgggc aagccagatc tatccaggga ttaaagtaaa gcaattatgt
841 aaactcctca ggggggccaa agcacta
//
last modified: Tue May 31 10:56 2022