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LOCUS	    JX198728		     297 bp    RNA     linear	VRL 29-JUL-2012
DEFINITION  HIV-1 isolate Pt1_wk0 clone C20 from USA protease (pol) gene,
	    partial cds
ACCESSION   JX198728
VERSION     JX198728.1 GI:397316480
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
	    and Holodniy,M.
  TITLE     Development of elvitegravir resistance and linkage of integrase
	    inhibitor mutations with protease and reverse transcriptase
	    resistance mutations
  JOURNAL   PLoS ONE 7 (7), E40514 (2012)
  PUBMED    22815755
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
	    and Holodniy,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2012) Infectious Diseases, School of Medicine,
	    Stanford University, S-169, 300 Pasteur Drive, Stanford, CA 94305,
	    USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Pt1_wk0"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="C20"
		     /country="USA"
		     /collection_date="2006"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AFO41286.1"
		     /db_xref="GI:397316481"
		     /translation="PQITLWQRPVVTVKIEGQLGEALLDTGADDTVFEDINLPGKWKP
		     KMIGGIGGFVKVRQYDQITIEICGHKVTGPVLVGPTPCNVIGRNLMTQLGCTLNF"
BASE COUNT	104 a	  50 c	   70 g     73 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccgtc gtcacagtaa agatagaggg gcagctaggg 
      61 gaagctctat tagacacagg agcagatgat acagtatttg aagacataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggttttg tcaaagtaag acagtatgat 
     181 cagataacca tagaaatctg tggacataaa gtgactggtc cagtattagt aggacctaca 
     241 ccttgcaacg taattggaag aaatctgatg actcaacttg gttgtactct aaatttt
//
last modified: Tue May 31 10:56 2022


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