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LOCUS JX198728 297 bp RNA linear VRL 29-JUL-2012
DEFINITION HIV-1 isolate Pt1_wk0 clone C20 from USA protease (pol) gene,
partial cds
ACCESSION JX198728
VERSION JX198728.1 GI:397316480
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 297)
Show all sequences for reference 1
AUTHORS Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
and Holodniy,M.
TITLE Development of elvitegravir resistance and linkage of integrase
inhibitor mutations with protease and reverse transcriptase
resistance mutations
JOURNAL PLoS ONE 7 (7), E40514 (2012)
PUBMED 22815755
REFERENCE 2 (bases 1 to 297)
Show all sequences for reference 2
AUTHORS Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
and Holodniy,M.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2012) Infectious Diseases, School of Medicine,
Stanford University, S-169, 300 Pasteur Drive, Stanford, CA 94305,
USA
FEATURES Location/Qualifiers
source 1..297
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Pt1_wk0"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="C20"
/country="USA"
/collection_date="2006"
gene <1..>297
/gene="pol"
CDS <1..>297
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="AFO41286.1"
/db_xref="GI:397316481"
/translation="PQITLWQRPVVTVKIEGQLGEALLDTGADDTVFEDINLPGKWKP
KMIGGIGGFVKVRQYDQITIEICGHKVTGPVLVGPTPCNVIGRNLMTQLGCTLNF"
BASE COUNT 104 a 50 c 70 g 73 t
ORIGIN
1 cctcaaatca ctctttggca acgacccgtc gtcacagtaa agatagaggg gcagctaggg
61 gaagctctat tagacacagg agcagatgat acagtatttg aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggttttg tcaaagtaag acagtatgat
181 cagataacca tagaaatctg tggacataaa gtgactggtc cagtattagt aggacctaca
241 ccttgcaacg taattggaag aaatctgatg actcaacttg gttgtactct aaatttt
//
last modified: Tue May 31 10:56 2022