HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JX198697		     663 bp    RNA     linear	VRL 29-JUL-2012
DEFINITION  HIV-1 isolate Pt1_wk0 clone C10 from USA integrase (pol) gene,
	    partial cds
ACCESSION   JX198697
VERSION     JX198697.1 GI:397311359
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 663)
            Show all sequences for reference 1
  AUTHORS   Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
	    and Holodniy,M.
  TITLE     Development of elvitegravir resistance and linkage of integrase
	    inhibitor mutations with protease and reverse transcriptase
	    resistance mutations
  JOURNAL   PLoS ONE 7 (7), E40514 (2012)
  PUBMED    22815755
REFERENCE   2 (bases 1 to 663)
            Show all sequences for reference 2
  AUTHORS   Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
	    and Holodniy,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2012) Infectious Diseases, School of Medicine,
	    Stanford University, S-169, 300 Pasteur Drive, Stanford, CA 94305,
	    USA
FEATURES             Location/Qualifiers
     source	     1..663
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Pt1_wk0"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="C10"
		     /country="USA"
		     /collection_date="2006"
     gene	     <1..>663
		     /gene="pol"
     CDS	     <1..>663
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="AFO38732.1"
		     /db_xref="GI:397311360"
		     /translation="FLDGIDKAQEEHEKYHNNWKAMVSDFNLPPVVAKEIVASCDKCQ
		     LKGEAMHGQVDCSPEIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
		     KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQIT
		     KIQ"
BASE COUNT	265 a	 106 c	  151 g    141 t
ORIGIN
       1 tttttagatg gaatagataa agcccaagag gaacatgaga aatatcacaa taattggaaa 
      61 gcaatggtca gtgattttaa cctgccacct gtggtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccagaaata 
     181 tggcaactag attgtacaca tctagaagga aaaattatcc tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga agttatccca gcagagacag ggcaggaaac agcatacttt 
     301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat 
     361 ttcaccagta ctacagttaa ggccgcctgt tggtgggcag ggatcaagca ggaatttggc 
     421 attccctaca atccccaaag tcagggagta gtagaatcta tgaataaaga attaaagaaa 
     481 attataggac aggtaagaga tcaagctgaa catcttaaga cagcagtaca aatggcagta 
     541 tttatccaca attttaagag aaaagggggg attggagggt acagtgcagg ggaaagaata 
     601 gtagacataa tagcatcaga catacaaact aaagaactac agaaacaaat tacaaaaatt 
     661 caa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health