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LOCUS JX198697 663 bp RNA linear VRL 29-JUL-2012
DEFINITION HIV-1 isolate Pt1_wk0 clone C10 from USA integrase (pol) gene,
partial cds
ACCESSION JX198697
VERSION JX198697.1 GI:397311359
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 663)
Show all sequences for reference 1
AUTHORS Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
and Holodniy,M.
TITLE Development of elvitegravir resistance and linkage of integrase
inhibitor mutations with protease and reverse transcriptase
resistance mutations
JOURNAL PLoS ONE 7 (7), E40514 (2012)
PUBMED 22815755
REFERENCE 2 (bases 1 to 663)
Show all sequences for reference 2
AUTHORS Winters,M.A., Lloyd,R.M. Jr.., Shafer,R.W., Kozal,M.J., Miller,M.D.
and Holodniy,M.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2012) Infectious Diseases, School of Medicine,
Stanford University, S-169, 300 Pasteur Drive, Stanford, CA 94305,
USA
FEATURES Location/Qualifiers
source 1..663
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Pt1_wk0"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="C10"
/country="USA"
/collection_date="2006"
gene <1..>663
/gene="pol"
CDS <1..>663
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="AFO38732.1"
/db_xref="GI:397311360"
/translation="FLDGIDKAQEEHEKYHNNWKAMVSDFNLPPVVAKEIVASCDKCQ
LKGEAMHGQVDCSPEIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFIL
KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQIT
KIQ"
BASE COUNT 265 a 106 c 151 g 141 t
ORIGIN
1 tttttagatg gaatagataa agcccaagag gaacatgaga aatatcacaa taattggaaa
61 gcaatggtca gtgattttaa cctgccacct gtggtagcaa aagaaatagt agccagctgt
121 gataaatgtc agctaaaagg agaagccatg catggacaag tagactgtag tccagaaata
181 tggcaactag attgtacaca tctagaagga aaaattatcc tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga agttatccca gcagagacag ggcaggaaac agcatacttt
301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat
361 ttcaccagta ctacagttaa ggccgcctgt tggtgggcag ggatcaagca ggaatttggc
421 attccctaca atccccaaag tcagggagta gtagaatcta tgaataaaga attaaagaaa
481 attataggac aggtaagaga tcaagctgaa catcttaaga cagcagtaca aatggcagta
541 tttatccaca attttaagag aaaagggggg attggagggt acagtgcagg ggaaagaata
601 gtagacataa tagcatcaga catacaaact aaagaactac agaaacaaat tacaaaaatt
661 caa
//
last modified: Tue May 31 10:56 2022