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LOCUS	    JX191469		    2544 bp    RNA     linear	SYN 05-SEP-2013
DEFINITION  Simian-Human immunodeficiency virus isolate R01093W40036D7 envelope
	    glycoprotein (env) gene, complete cds
ACCESSION   JX191469
VERSION     JX191469.1 GI:472178659
KEYWORDS    .
SOURCE	    Simian-Human immunodeficiency virus
  ORGANISM  Simian-Human immunodeficiency virus Viruses; Retro-transcribing
	    viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
	    lentivirus group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 2544)
            Show all sequences for reference 1
  AUTHORS   Varela,M., Verschoor,E., Lai,R.P., Hughes,J., Mooj,P.,
	    McKinley,T.J., Fitzmaurice,T.J., Landskron,L., Willett,B.J.,
	    Frost,S.D., Bogers,W.M. and Heeney,J.L.
  TITLE     Genetic imprint of vaccination on simian/human immunodeficiency
	    virus type 1 transmitted viral genomes in rhesus macaques
  JOURNAL   PLoS ONE 8 (8), E70814 (2013)
  PUBMED    23967111
REFERENCE   2 (bases 1 to 2544)
            Show all sequences for reference 2
  AUTHORS   Varela,M., Hughes,J., Lai,R., Mooj,P., David,D., McKinley,T.,
	    Fitzmaurice,T., Landskron,L., Willett,B., Frost,S., Bogers,W. and
	    Heeney,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2012) Department of Veterinary Medicine,
	    University of Cambridge, Madingley Road, Cambridge CB30ES, England
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2544
		     /organism="Simian-Human immunodeficiency virus"
		     /mol_type="other RNA"
		     /isolate="R01093W40036D7"
		     /db_xref="taxon:57667"
     gene	     1..2544
		     /gene="env"
     CDS	     1..2544
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AGI21211.1"
		     /db_xref="GI:472178660"
		     /translation="MRVKGIRKNYQHLWRGGTLLLGMLMICSAVEKLWVTVYYGVPVW
		     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLHCTNLKNATNTKSSNWEEMDRGEIKNCSFKVT
		     TSIRNKMQKEYALFYKLDVVPIDNDNTSYKLINCNTSVITQACPKVSFEPIPIHYCAP
		     AGFAILKCNDKKFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEGVVIRSENFT
		     DNVKTIIVQLKESVEINCTRPNNNTRKSITIGPGRAFYATGDIIGDIRQAHCNISREK
		     WDNTLKQIVTKLQAQFGNKTIVFKQSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWN
		     NTIGPNNTNGTITLPCRIKQIINRWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGK
		     EISNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVTLGA
		     MFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQ
		     LQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDQIWNNMTWMEWER
		     EIDNYTNLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDISKWLWYIKIFIMIVGG
		     LVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSSPLV
		     HGLLALIWDDLRSLCLFSYHRLRDLILIAARIVELLGRRGWEALKYWGNLLQYWIQEL
		     KNSAVSLFDAIAIAVAEGTDRIIEVAQRIGRAFLHIPRRIRQGLERTLL"
BASE COUNT	885 a	 427 c	  603 g    629 t
ORIGIN
       1 atgagagtga aggggatcag gaagaattat cagcacttgt ggagaggggg caccttgctc 
      61 cttgggatgt tgatgatctg tagtgctgta gaaaaattgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcctat 
     181 gacacagagg tacataatgt ctgggccaca catgcctgtg tacccacaga ccctaaccca 
     241 caagaaatag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gtctaaagcc atgtgtaaag 
     361 ttaaccccac tctgtgttac tctacattgc actaatttga agaatgctac taataccaag 
     421 agtagtaatt gggaagagat ggacagagga gaaataaaaa attgctcttt caaggtcacc 
     481 acaagcataa gaaataagat gcagaaagaa tatgcacttt tttataaact tgatgtagta 
     541 ccaatagata atgataatac aagctataaa ttgataaatt gtaacacctc agtcattaca 
     601 caggcctgtc caaaggtatc ctttgaacca attcccatac attattgtgc cccggctggt 
     661 tttgcgattc taaagtgtaa tgataagaag ttcaatggat caggaccatg tacaaatgtc 
     721 agcacagtac aatgtacaca tggaattaga ccagtggtgt caactcaatt gctgttaaat 
     781 ggcagtctag cagaagaagg ggtagtaatt agatctgaaa atttcacaga caatgttaaa 
     841 actataatag tacagctgaa ggaatctgta gaaattaatt gtacaagacc taacaataat 
     901 acaagaaaaa gtataactat aggaccgggg agagcatttt atgcaacagg agacataata 
     961 ggagatataa gacaagcaca ttgtaacatt agtagagaaa aatgggataa cactttaaaa 
    1021 cagatagtta caaaattaca agcacaattt gggaataaaa caatagtctt taagcaatcc 
    1081 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggagggga atttttctac 
    1141 tgtaattcaa cacagctttt taatagtact tggaataata ctatagggcc aaataacact 
    1201 aatggaacta tcacactccc atgcagaata aaacaaatta taaacaggtg gcaggaagta 
    1261 ggaaaagcaa tgtatgcccc tcccatcaga ggacaaatta gatgttcatc aaatattaca 
    1321 ggactgctat taacaagaga tggtggtaaa gagatcagta acaccaccga gatcttcaga 
    1381 cctggaggtg gagatatgag ggacaattgg agaagtgaat tatataaata taaagtagta 
    1441 aaaattgagc cattaggagt agcacccacc aaggcaaaga gaagagtggt gcagagagaa 
    1501 aaaagagcag tgacgctagg agctatgttc cttgggttct tgggagcagc aggaagcact 
    1561 atgggcgcag cgtcactgac gctgacggta caggccagac aattattgtc tggtatagtg 
    1621 caacagcaga acaatttgct gagagctatt gaggcgcaac agcatctgtt gcaactcaca 
    1681 gtctggggca tcaagcagct ccaggcaaga gtcctggctg tggaaagata cctaaaggat 
    1741 caacagctcc tggggatttg gggttgctct ggaaaactca tttgcaccac tgctgtgcct 
    1801 tggaatgcta gttggagtaa taaatctctg gatcagattt ggaataacat gacctggatg 
    1861 gagtgggaga gagaaattga caattacaca aacttaatat acaccttaat tgaagaatcg 
    1921 cagaaccaac aagaaaagaa tgaacaagaa ttattagaat tggataagtg ggcaagtttg 
    1981 tggaattggt ttgacatatc aaaatggctg tggtatataa aaatattcat aatgatagta 
    2041 ggaggtttag taggtttaag gatagttttt actgtacttt ctatagtgaa tagagttagg 
    2101 cagggatact caccattatc atttcagacc cgcttcccag ccccaagggg acccgacagg 
    2161 cccgaaggaa tcgaagaaga aggtggagag agagacagag acagatccag tccattagtg 
    2221 catggattat tagcactcat ctgggacgat ctacggagcc tgtgcctctt cagctaccac 
    2281 cgcttgagag acttaatctt gattgcagcg aggattgtgg aacttctggg acgcaggggg 
    2341 tgggaagccc tcaagtattg ggggaatctc ctgcagtatt ggattcagga actaaagaat 
    2401 agtgctgtta gtttgtttga tgccatagct atagcagtag ctgaggggac agataggatt 
    2461 atagaagtag cacaaagaat tggtagagct tttctccaca tacctagaag aataagacag 
    2521 ggccttgaaa ggactttgct ataa
//
last modified: Tue May 31 10:56 2022


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