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LOCUS JX191469 2544 bp RNA linear SYN 05-SEP-2013
DEFINITION Simian-Human immunodeficiency virus isolate R01093W40036D7 envelope
glycoprotein (env) gene, complete cds
ACCESSION JX191469
VERSION JX191469.1 GI:472178659
KEYWORDS .
SOURCE Simian-Human immunodeficiency virus
ORGANISM Simian-Human immunodeficiency virus Viruses; Retro-transcribing
viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
lentivirus group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 2544)
Show all sequences for reference 1
AUTHORS Varela,M., Verschoor,E., Lai,R.P., Hughes,J., Mooj,P.,
McKinley,T.J., Fitzmaurice,T.J., Landskron,L., Willett,B.J.,
Frost,S.D., Bogers,W.M. and Heeney,J.L.
TITLE Genetic imprint of vaccination on simian/human immunodeficiency
virus type 1 transmitted viral genomes in rhesus macaques
JOURNAL PLoS ONE 8 (8), E70814 (2013)
PUBMED 23967111
REFERENCE 2 (bases 1 to 2544)
Show all sequences for reference 2
AUTHORS Varela,M., Hughes,J., Lai,R., Mooj,P., David,D., McKinley,T.,
Fitzmaurice,T., Landskron,L., Willett,B., Frost,S., Bogers,W. and
Heeney,J.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2012) Department of Veterinary Medicine,
University of Cambridge, Madingley Road, Cambridge CB30ES, England
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2544
/organism="Simian-Human immunodeficiency virus"
/mol_type="other RNA"
/isolate="R01093W40036D7"
/db_xref="taxon:57667"
gene 1..2544
/gene="env"
CDS 1..2544
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AGI21211.1"
/db_xref="GI:472178660"
/translation="MRVKGIRKNYQHLWRGGTLLLGMLMICSAVEKLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLENVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLHCTNLKNATNTKSSNWEEMDRGEIKNCSFKVT
TSIRNKMQKEYALFYKLDVVPIDNDNTSYKLINCNTSVITQACPKVSFEPIPIHYCAP
AGFAILKCNDKKFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEGVVIRSENFT
DNVKTIIVQLKESVEINCTRPNNNTRKSITIGPGRAFYATGDIIGDIRQAHCNISREK
WDNTLKQIVTKLQAQFGNKTIVFKQSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWN
NTIGPNNTNGTITLPCRIKQIINRWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGK
EISNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVTLGA
MFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQ
LQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDQIWNNMTWMEWER
EIDNYTNLIYTLIEESQNQQEKNEQELLELDKWASLWNWFDISKWLWYIKIFIMIVGG
LVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSSPLV
HGLLALIWDDLRSLCLFSYHRLRDLILIAARIVELLGRRGWEALKYWGNLLQYWIQEL
KNSAVSLFDAIAIAVAEGTDRIIEVAQRIGRAFLHIPRRIRQGLERTLL"
BASE COUNT 885 a 427 c 603 g 629 t
ORIGIN
1 atgagagtga aggggatcag gaagaattat cagcacttgt ggagaggggg caccttgctc
61 cttgggatgt tgatgatctg tagtgctgta gaaaaattgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcctat
181 gacacagagg tacataatgt ctgggccaca catgcctgtg tacccacaga ccctaaccca
241 caagaaatag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gtctaaagcc atgtgtaaag
361 ttaaccccac tctgtgttac tctacattgc actaatttga agaatgctac taataccaag
421 agtagtaatt gggaagagat ggacagagga gaaataaaaa attgctcttt caaggtcacc
481 acaagcataa gaaataagat gcagaaagaa tatgcacttt tttataaact tgatgtagta
541 ccaatagata atgataatac aagctataaa ttgataaatt gtaacacctc agtcattaca
601 caggcctgtc caaaggtatc ctttgaacca attcccatac attattgtgc cccggctggt
661 tttgcgattc taaagtgtaa tgataagaag ttcaatggat caggaccatg tacaaatgtc
721 agcacagtac aatgtacaca tggaattaga ccagtggtgt caactcaatt gctgttaaat
781 ggcagtctag cagaagaagg ggtagtaatt agatctgaaa atttcacaga caatgttaaa
841 actataatag tacagctgaa ggaatctgta gaaattaatt gtacaagacc taacaataat
901 acaagaaaaa gtataactat aggaccgggg agagcatttt atgcaacagg agacataata
961 ggagatataa gacaagcaca ttgtaacatt agtagagaaa aatgggataa cactttaaaa
1021 cagatagtta caaaattaca agcacaattt gggaataaaa caatagtctt taagcaatcc
1081 tcaggagggg acccagaaat tgtaatgcac agttttaatt gtggagggga atttttctac
1141 tgtaattcaa cacagctttt taatagtact tggaataata ctatagggcc aaataacact
1201 aatggaacta tcacactccc atgcagaata aaacaaatta taaacaggtg gcaggaagta
1261 ggaaaagcaa tgtatgcccc tcccatcaga ggacaaatta gatgttcatc aaatattaca
1321 ggactgctat taacaagaga tggtggtaaa gagatcagta acaccaccga gatcttcaga
1381 cctggaggtg gagatatgag ggacaattgg agaagtgaat tatataaata taaagtagta
1441 aaaattgagc cattaggagt agcacccacc aaggcaaaga gaagagtggt gcagagagaa
1501 aaaagagcag tgacgctagg agctatgttc cttgggttct tgggagcagc aggaagcact
1561 atgggcgcag cgtcactgac gctgacggta caggccagac aattattgtc tggtatagtg
1621 caacagcaga acaatttgct gagagctatt gaggcgcaac agcatctgtt gcaactcaca
1681 gtctggggca tcaagcagct ccaggcaaga gtcctggctg tggaaagata cctaaaggat
1741 caacagctcc tggggatttg gggttgctct ggaaaactca tttgcaccac tgctgtgcct
1801 tggaatgcta gttggagtaa taaatctctg gatcagattt ggaataacat gacctggatg
1861 gagtgggaga gagaaattga caattacaca aacttaatat acaccttaat tgaagaatcg
1921 cagaaccaac aagaaaagaa tgaacaagaa ttattagaat tggataagtg ggcaagtttg
1981 tggaattggt ttgacatatc aaaatggctg tggtatataa aaatattcat aatgatagta
2041 ggaggtttag taggtttaag gatagttttt actgtacttt ctatagtgaa tagagttagg
2101 cagggatact caccattatc atttcagacc cgcttcccag ccccaagggg acccgacagg
2161 cccgaaggaa tcgaagaaga aggtggagag agagacagag acagatccag tccattagtg
2221 catggattat tagcactcat ctgggacgat ctacggagcc tgtgcctctt cagctaccac
2281 cgcttgagag acttaatctt gattgcagcg aggattgtgg aacttctggg acgcaggggg
2341 tgggaagccc tcaagtattg ggggaatctc ctgcagtatt ggattcagga actaaagaat
2401 agtgctgtta gtttgtttga tgccatagct atagcagtag ctgaggggac agataggatt
2461 atagaagtag cacaaagaat tggtagagct tttctccaca tacctagaag aataagacag
2521 ggccttgaaa ggactttgct ataa
//
last modified: Tue May 31 10:56 2022