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LOCUS JX191385 2516 bp RNA linear SYN 05-SEP-2013
DEFINITION Simian-Human immunodeficiency virus isolate R99008W20045E11 env
gene, complete sequence
ACCESSION JX191385
VERSION JX191385.1 GI:472178505
KEYWORDS .
SOURCE Simian-Human immunodeficiency virus
ORGANISM Simian-Human immunodeficiency virus Viruses; Retro-transcribing
viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
lentivirus group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 2516)
Show all sequences for reference 1
AUTHORS Varela,M., Verschoor,E., Lai,R.P., Hughes,J., Mooj,P.,
McKinley,T.J., Fitzmaurice,T.J., Landskron,L., Willett,B.J.,
Frost,S.D., Bogers,W.M. and Heeney,J.L.
TITLE Genetic imprint of vaccination on simian/human immunodeficiency
virus type 1 transmitted viral genomes in rhesus macaques
JOURNAL PLoS ONE 8 (8), E70814 (2013)
PUBMED 23967111
REFERENCE 2 (bases 1 to 2516)
Show all sequences for reference 2
AUTHORS Varela,M., Hughes,J., Lai,R., Mooj,P., David,D., McKinley,T.,
Fitzmaurice,T., Landskron,L., Willett,B., Frost,S., Bogers,W. and
Heeney,J.
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2012) Department of Veterinary Medicine,
University of Cambridge, Madingley Road, Cambridge CB30ES, England
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2516
/organism="Simian-Human immunodeficiency virus"
/mol_type="other RNA"
/isolate="R99008W20045E11"
/db_xref="taxon:57667"
gene 1..2516
/gene="env"
misc_feature 1..2516
/gene="env"
/note="nonfunctional envelope glycoprotein due to
mutation"
BASE COUNT 885 a 423 c 587 g 621 t
ORIGIN
1 atgagagtga aggggatcag gaagaattat cagcacttgt ggagaggggg caccttgctc
61 cttgggatgt tgatgatctg tagtgctgta gaaaaattgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcctat
181 gacacagagg tacataatgt ctgggccaca catgcctgtg tacccacaga ccctaaccca
241 caagaaatag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gtctaaagcc atgtgtaaag
361 ttaaccccac tctgtgttac tctacattgc actaatttga agaatgctac taataccaag
421 agtagtaatt ggaaagagat ggacagagga gaaataaaaa attgctcttt caaggtcacc
481 acaagcataa aaaataagat gcagaaagaa tatgcacttt tttataaact tgatgtagta
541 ccaatagata atgataatac aagctataaa ttgataaatt gtaacacctc agtcattaca
601 caggcctgtc caaaggtatc ctttgaacca attcccatac attattgtgc cccggctggt
661 tttgcgattc taaagtgtaa tgataagaag ttcaatggat caggaccatg tacaaatgtc
721 agcacagtac aatgtacaca tggaattagg ccagtagtgt caactcaatt actgttgaat
781 ggcagtctag cagaagaagg ggtagtaatt agatctgaaa atttcacaga caatgttaaa
841 aagaaattaa ttgtacaaga cctaacaata atacaagaaa aagtataact ataggaccgg
901 ggagagcatt ttatgcaaca ggagacataa taggagatat aagacaagca cattgtaaca
961 ttagtggaga aaaatggaat aacactttaa aacagatagt tacaaaatta caagcacaat
1021 ttgggaataa aacaatagtc tttaagcaat cctcaggagg ggacccagaa attgtaatgc
1081 acagttttaa ttgtggaggg gaatttttct actgtaattc aacacagctt tttaatagta
1141 cttggaataa tactataggg ccaaataaca ctaatggaac tatcacactc ccatgcagaa
1201 taaaacaaat tataaacagg tggcaggaag taggaaaagc aatgtatgcc cctcccgtca
1261 gaggacaaat tagatgctca tcaaatatta caggactgct attaacaaga gatggtggta
1321 aagagatcag taacaccacc gagatcttca gacctggagg tggagatatg agggacaatt
1381 gaaaaagtga attatataaa tataaagtag taaaaattga accattagga gtagcaccca
1441 ccaaggcaaa gagaagagtg gtgcagagag aaaaaagagc agtgacgcta ggagctatgt
1501 tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcactg acgctgacgg
1561 tacaggccag acaattattg tctggtatag tgcaacagca gaacaatttg ctgagagcta
1621 ttgaggcgca acagcatctg ttgcaactca cagtctgggg catcaagcag ctccaggcaa
1681 gagtcctggc tgtggaaaga tacctaaagg atcaacagct cctagggatt tggggttgct
1741 ctggaaaact catttgcacc actgctgtgc cttggaatgc tagttggagt aataaatctc
1801 tggatcagat ttggaataac atgacctgga tggagtggga gagagaaatt gacaattaca
1861 caaacttaat atacacctta attgaagaat cgcagaacca acaagaaaaa aatgaacaag
1921 aattattaga attggataag tgggcaagtt tgtggaattg gtttgacata tcaaaatgac
1981 tgtggtatat aaaaatattc ataataatag taggaggttt agtaggttta aggatagttt
2041 ttactgtact ttctatagtg aatagagtta ggcagggata ctcaccatta tcatttcaga
2101 cccgcttccc agccccaagg ggacccgaca ggcccgaagg aatcgaagaa aaaggtggag
2161 agagagacag agacagatcc agtccattag tgcatggatt attagcactc atctgggacg
2221 atctacggag cctgtgcctc ttcagctacc accgcttgag agacttaatc ttgattgcag
2281 cgaggattgt ggaacttctg ggacgcaggg ggtgggaagc cctcaagtat tgggggaatc
2341 tcctgcagta ttggattcag gaactaaaaa atagtgctgt tagtttgttt gatgccatag
2401 ctatagcagt agctgagggg acagatagga ttatagaagt agcacaaaga attggtagag
2461 cttttctcca catacctaga agaataagac agggccttga aaggattttg ctataa
//
last modified: Tue May 31 10:56 2022