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LOCUS	    JX191385		    2516 bp    RNA     linear	SYN 05-SEP-2013
DEFINITION  Simian-Human immunodeficiency virus isolate R99008W20045E11 env
	    gene, complete sequence
ACCESSION   JX191385
VERSION     JX191385.1 GI:472178505
KEYWORDS    .
SOURCE	    Simian-Human immunodeficiency virus
  ORGANISM  Simian-Human immunodeficiency virus Viruses; Retro-transcribing
	    viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
	    lentivirus group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 2516)
            Show all sequences for reference 1
  AUTHORS   Varela,M., Verschoor,E., Lai,R.P., Hughes,J., Mooj,P.,
	    McKinley,T.J., Fitzmaurice,T.J., Landskron,L., Willett,B.J.,
	    Frost,S.D., Bogers,W.M. and Heeney,J.L.
  TITLE     Genetic imprint of vaccination on simian/human immunodeficiency
	    virus type 1 transmitted viral genomes in rhesus macaques
  JOURNAL   PLoS ONE 8 (8), E70814 (2013)
  PUBMED    23967111
REFERENCE   2 (bases 1 to 2516)
            Show all sequences for reference 2
  AUTHORS   Varela,M., Hughes,J., Lai,R., Mooj,P., David,D., McKinley,T.,
	    Fitzmaurice,T., Landskron,L., Willett,B., Frost,S., Bogers,W. and
	    Heeney,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2012) Department of Veterinary Medicine,
	    University of Cambridge, Madingley Road, Cambridge CB30ES, England
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..2516
		     /organism="Simian-Human immunodeficiency virus"
		     /mol_type="other RNA"
		     /isolate="R99008W20045E11"
		     /db_xref="taxon:57667"
     gene	     1..2516
		     /gene="env"
     misc_feature    1..2516
		     /gene="env"
		     /note="nonfunctional envelope glycoprotein due to
		     mutation"
BASE COUNT	885 a	 423 c	  587 g    621 t
ORIGIN
       1 atgagagtga aggggatcag gaagaattat cagcacttgt ggagaggggg caccttgctc 
      61 cttgggatgt tgatgatctg tagtgctgta gaaaaattgt gggtcacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcctat 
     181 gacacagagg tacataatgt ctgggccaca catgcctgtg tacccacaga ccctaaccca 
     241 caagaaatag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa taacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gtctaaagcc atgtgtaaag 
     361 ttaaccccac tctgtgttac tctacattgc actaatttga agaatgctac taataccaag 
     421 agtagtaatt ggaaagagat ggacagagga gaaataaaaa attgctcttt caaggtcacc 
     481 acaagcataa aaaataagat gcagaaagaa tatgcacttt tttataaact tgatgtagta 
     541 ccaatagata atgataatac aagctataaa ttgataaatt gtaacacctc agtcattaca 
     601 caggcctgtc caaaggtatc ctttgaacca attcccatac attattgtgc cccggctggt 
     661 tttgcgattc taaagtgtaa tgataagaag ttcaatggat caggaccatg tacaaatgtc 
     721 agcacagtac aatgtacaca tggaattagg ccagtagtgt caactcaatt actgttgaat 
     781 ggcagtctag cagaagaagg ggtagtaatt agatctgaaa atttcacaga caatgttaaa 
     841 aagaaattaa ttgtacaaga cctaacaata atacaagaaa aagtataact ataggaccgg 
     901 ggagagcatt ttatgcaaca ggagacataa taggagatat aagacaagca cattgtaaca 
     961 ttagtggaga aaaatggaat aacactttaa aacagatagt tacaaaatta caagcacaat 
    1021 ttgggaataa aacaatagtc tttaagcaat cctcaggagg ggacccagaa attgtaatgc 
    1081 acagttttaa ttgtggaggg gaatttttct actgtaattc aacacagctt tttaatagta 
    1141 cttggaataa tactataggg ccaaataaca ctaatggaac tatcacactc ccatgcagaa 
    1201 taaaacaaat tataaacagg tggcaggaag taggaaaagc aatgtatgcc cctcccgtca 
    1261 gaggacaaat tagatgctca tcaaatatta caggactgct attaacaaga gatggtggta 
    1321 aagagatcag taacaccacc gagatcttca gacctggagg tggagatatg agggacaatt 
    1381 gaaaaagtga attatataaa tataaagtag taaaaattga accattagga gtagcaccca 
    1441 ccaaggcaaa gagaagagtg gtgcagagag aaaaaagagc agtgacgcta ggagctatgt 
    1501 tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcactg acgctgacgg 
    1561 tacaggccag acaattattg tctggtatag tgcaacagca gaacaatttg ctgagagcta 
    1621 ttgaggcgca acagcatctg ttgcaactca cagtctgggg catcaagcag ctccaggcaa 
    1681 gagtcctggc tgtggaaaga tacctaaagg atcaacagct cctagggatt tggggttgct 
    1741 ctggaaaact catttgcacc actgctgtgc cttggaatgc tagttggagt aataaatctc 
    1801 tggatcagat ttggaataac atgacctgga tggagtggga gagagaaatt gacaattaca 
    1861 caaacttaat atacacctta attgaagaat cgcagaacca acaagaaaaa aatgaacaag 
    1921 aattattaga attggataag tgggcaagtt tgtggaattg gtttgacata tcaaaatgac 
    1981 tgtggtatat aaaaatattc ataataatag taggaggttt agtaggttta aggatagttt 
    2041 ttactgtact ttctatagtg aatagagtta ggcagggata ctcaccatta tcatttcaga 
    2101 cccgcttccc agccccaagg ggacccgaca ggcccgaagg aatcgaagaa aaaggtggag 
    2161 agagagacag agacagatcc agtccattag tgcatggatt attagcactc atctgggacg 
    2221 atctacggag cctgtgcctc ttcagctacc accgcttgag agacttaatc ttgattgcag 
    2281 cgaggattgt ggaacttctg ggacgcaggg ggtgggaagc cctcaagtat tgggggaatc 
    2341 tcctgcagta ttggattcag gaactaaaaa atagtgctgt tagtttgttt gatgccatag 
    2401 ctatagcagt agctgagggg acagatagga ttatagaagt agcacaaaga attggtagag 
    2461 cttttctcca catacctaga agaataagac agggccttga aaggattttg ctataa
//
last modified: Tue May 31 10:56 2022


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