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LOCUS JX171242 636 bp RNA linear VRL 30-JAN-2013
DEFINITION HIV-1 isolate EC_104 from USA nef protein gene, complete cds
ACCESSION JX171242
VERSION JX171242.1 GI:402170403
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 636)
Show all sequences for reference 1
AUTHORS Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
Brumme,Z.L., Brockman,M.A. and Ueno,T.
TITLE Attenuation of multiple Nef functions in HIV-1 elite controllers
JOURNAL Retrovirology 10 (1), 1 (2013)
PUBMED 23289738
REFERENCE 2 (bases 1 to 636)
Show all sequences for reference 2
AUTHORS Mwimanzi,P.M.
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2012) Faculty of Health Sciences, Simon Fraser
University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE 3
Show all sequences for reference 3
AUTHORS Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
TITLE Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
HIV-1 Entry Receptors.
JOURNAL J. Virol.. 89(18); 9639-52 (2015)
PUBMED 26178998
COMMENT ##Assembly-Data-START## Assembly Method Sequencher v. Version 9.2
Sequencing Technology Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..636
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="EC_104"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
CDS 1..636
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AFQ33008.1"
/db_xref="GI:402170404"
/translation="MGGKLSKNKMAAGWSRVRERMRRAEPRAEPAAAGVGAVSRDLER
HGAITSSNTATNNADCAWLEAQEEEEVGFPVKPQVPLRPMTYKGAVDLSHFLKEKGGL
EGLIYSQQRQDILDLWVYHTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVDPDKVEE
ATEGENNCLLHPVNQHGMDDPEKEVLQWKFDSRLAFHHMARELHPEYYKNC"
BASE COUNT 195 a 137 c 179 g 125 t
ORIGIN
1 atgggtggca agttgtcaaa aaataagatg gctgctggat ggtcccgtgt aagggaaaga
61 atgagacgag ctgagccacg agctgagcca gcagcagcgg gggtgggagc agtatctcga
121 gatctggaaa gacatggggc aattacaagt agcaatacag caactaacaa tgctgattgt
181 gcctggctgg aagcacaaga ggaggaggaa gtaggctttc cagtcaaacc tcaggtacct
241 ttaaggccaa tgacttacaa gggagctgta gatcttagcc actttttaaa agaaaagggg
301 ggactggaag ggctaattta ctcccagcaa agacaagata tacttgatct atgggtctac
361 cacacacaag gctttttccc tgattggcaa aattacacac cagggccagg ggtcagatac
421 ccactgacct ttggctggtg cttcaagcta gtaccagttg acccagacaa ggtagaagag
481 gccacggaag gagagaacaa ctgcttgtta caccctgtga accagcacgg gatggatgac
541 ccagagaaag aagtgttaca gtggaagttt gacagccgcc tagcatttca ccacatggcc
601 cgagagctgc atccggagta ctacaagaac tgctga
//
last modified: Tue May 31 10:56 2022