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LOCUS	    JX171242		     636 bp    RNA     linear	VRL 30-JAN-2013
DEFINITION  HIV-1 isolate EC_104 from USA nef protein gene, complete cds
ACCESSION   JX171242
VERSION     JX171242.1 GI:402170403
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 636)
            Show all sequences for reference 1
  AUTHORS   Mwimanzi,P., Markle,T.J., Martin,E., Ogata,Y., Kuang,X.T.,
	    Tokunaga,M., Mahiti,M., Pereyra,F., Miura,T., Walker,B.D.,
	    Brumme,Z.L., Brockman,M.A. and Ueno,T.
  TITLE     Attenuation of multiple Nef functions in HIV-1 elite controllers
  JOURNAL   Retrovirology 10 (1), 1 (2013)
  PUBMED    23289738
REFERENCE   2 (bases 1 to 636)
            Show all sequences for reference 2
  AUTHORS   Mwimanzi,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2012) Faculty of Health Sciences, Simon Fraser
	    University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Toyoda,M., Ogata,Y., Mahiti,M., Maeda,Y., Kuang,X.T., Miura,T.,
	    Jessen,H., Walker,B.D., Brockman,M.A., Brumme,Z.L. and Ueno,T.
  TITLE     Differential Ability of Primary HIV-1 Nef Isolates To Downregulate
	    HIV-1 Entry Receptors.
  JOURNAL   J. Virol.. 89(18); 9639-52 (2015)
  PUBMED    26178998
COMMENT     ##Assembly-Data-START## Assembly Method Sequencher v. Version 9.2
	    Sequencing Technology Sanger dideoxy sequencing
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..636
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="EC_104"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     CDS	     1..636
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AFQ33008.1"
		     /db_xref="GI:402170404"
		     /translation="MGGKLSKNKMAAGWSRVRERMRRAEPRAEPAAAGVGAVSRDLER
		     HGAITSSNTATNNADCAWLEAQEEEEVGFPVKPQVPLRPMTYKGAVDLSHFLKEKGGL
		     EGLIYSQQRQDILDLWVYHTQGFFPDWQNYTPGPGVRYPLTFGWCFKLVPVDPDKVEE
		     ATEGENNCLLHPVNQHGMDDPEKEVLQWKFDSRLAFHHMARELHPEYYKNC"
BASE COUNT	195 a	 137 c	  179 g    125 t
ORIGIN
       1 atgggtggca agttgtcaaa aaataagatg gctgctggat ggtcccgtgt aagggaaaga 
      61 atgagacgag ctgagccacg agctgagcca gcagcagcgg gggtgggagc agtatctcga 
     121 gatctggaaa gacatggggc aattacaagt agcaatacag caactaacaa tgctgattgt 
     181 gcctggctgg aagcacaaga ggaggaggaa gtaggctttc cagtcaaacc tcaggtacct 
     241 ttaaggccaa tgacttacaa gggagctgta gatcttagcc actttttaaa agaaaagggg 
     301 ggactggaag ggctaattta ctcccagcaa agacaagata tacttgatct atgggtctac 
     361 cacacacaag gctttttccc tgattggcaa aattacacac cagggccagg ggtcagatac 
     421 ccactgacct ttggctggtg cttcaagcta gtaccagttg acccagacaa ggtagaagag 
     481 gccacggaag gagagaacaa ctgcttgtta caccctgtga accagcacgg gatggatgac 
     541 ccagagaaag aagtgttaca gtggaagttt gacagccgcc tagcatttca ccacatggcc 
     601 cgagagctgc atccggagta ctacaagaac tgctga
//
last modified: Tue May 31 10:56 2022


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