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LOCUS JX160151 1497 bp DNA linear VRL 05-AUG-2012
DEFINITION HIV-1 isolate 10595 from USA pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JX160151
VERSION JX160151.1 GI:398660447
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
Pillay,D. and Eron,J.J.
TITLE Phylogenetic insights into regional HIV transmission.
JOURNAL AIDS. 26(14); 1813-22 (2012)
PUBMED 22739398
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Dennis,A.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="10595"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="2001"
/note="subtype: B"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFP14338.1"
/db_xref="GI:398660449"
/translation="PQITLWQRPLVTXKIGGQLKEALLDTGADNTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQVPIDICGXKVIGTVLIGPTPVNIIGRDLLTQLGCTLNFPIS
TIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLMDLRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQXSMTKILQPFRKQNPE
IVIYQYVDDLYVGSDLEIGQHRIKIEELRAHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEXI
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKT
GKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWET"
gene <1..40
/gene="gag"
CDS <1..40
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AFP14337.1"
/db_xref="GI:398660448"
/translation="LKSLFGNDPSSQ"
BASE COUNT 601 a 245 c 311 g 330 t 10 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacartaa agataggggg gcagttaaag
61 gaagctctat tagacacagg agcagataat acagtattag aagaaatgaa tttaccagga
121 aaatggaaac ccaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caggtaccca tagatatctg tggayataaa gttataggta cagtrctaat aggacctaca
241 cctgtcaaca taattggaag agatctgttg actcagcttg gttgcacctt aaattttccc
301 attagtacta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatytc aaaaattggg cctgaaaatc catataatac tccagtattt
481 gccataaaga aaaargacag tactaaatgg agaaaattaa tggatctcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacrgt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacaa ggatggaagg gatcaccagc aatattccaa
781 satagcatga caaaaatctt acagcctttt agaaaacaaa atccagaaat agttatctat
841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaataaaa
901 atagaggaac tgagagcaca cctgttaaag tggggattga ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct atggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttay gcagggatta aagtaaagca attatgyaaa
1141 ctccttaggg gagccaaagc actaacagaa rtaataccac taacagaaga agcagaacta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tccaaagact taatagcaga aatacagaag caggggcaag gtcaatggac atatcaaatt
1321 tatcaagagc catttaaaaa tctgaaaaca ggaaagtatg caagaatgaa gggtgcccac
1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga aagcatagta
1441 atatggggaa agactcctaa atttagactg cccatacaaa aagaaacatg ggaaaca
//
last modified: Tue May 31 10:56 2022