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LOCUS	    JX160151		    1497 bp    DNA     linear	VRL 05-AUG-2012
DEFINITION  HIV-1 isolate 10595 from USA pol protein (pol) and gag protein
	    (gag) genes, partial cds
ACCESSION   JX160151
VERSION     JX160151.1 GI:398660447
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Dennis,A.M., Hue,S., Hurt,C.B., Napravnik,S., Sebastian,J.,
	    Pillay,D. and Eron,J.J.
  TITLE     Phylogenetic insights into regional HIV transmission.
  JOURNAL   AIDS. 26(14); 1813-22 (2012)
  PUBMED    22739398
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Dennis,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2012) Medicine, University of North Carolina, 130
	    Mason Farm Road, Chapel Hill, NC 27599, USA
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="10595"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="2001"
		     /note="subtype: B"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFP14338.1"
		     /db_xref="GI:398660449"
		     /translation="PQITLWQRPLVTXKIGGQLKEALLDTGADNTVLEEMNLPGKWKP
		     KMIGGIGGFIKVRQYDQVPIDICGXKVIGTVLIGPTPVNIIGRDLLTQLGCTLNFPIS
		     TIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLMDLRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQXSMTKILQPFRKQNPE
		     IVIYQYVDDLYVGSDLEIGQHRIKIEELRAHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEXI
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKT
		     GKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWET"
     gene	     <1..40
		     /gene="gag"
     CDS	     <1..40
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AFP14337.1"
		     /db_xref="GI:398660448"
		     /translation="LKSLFGNDPSSQ"
BASE COUNT	601 a	 245 c	  311 g    330 t     10 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacartaa agataggggg gcagttaaag 
      61 gaagctctat tagacacagg agcagataat acagtattag aagaaatgaa tttaccagga 
     121 aaatggaaac ccaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtaccca tagatatctg tggayataaa gttataggta cagtrctaat aggacctaca 
     241 cctgtcaaca taattggaag agatctgttg actcagcttg gttgcacctt aaattttccc 
     301 attagtacta ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatytc aaaaattggg cctgaaaatc catataatac tccagtattt 
     481 gccataaaga aaaargacag tactaaatgg agaaaattaa tggatctcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacrgt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacaa ggatggaagg gatcaccagc aatattccaa 
     781 satagcatga caaaaatctt acagcctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaataaaa 
     901 atagaggaac tgagagcaca cctgttaaag tggggattga ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct atggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttay gcagggatta aagtaaagca attatgyaaa 
    1141 ctccttaggg gagccaaagc actaacagaa rtaataccac taacagaaga agcagaacta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tccaaagact taatagcaga aatacagaag caggggcaag gtcaatggac atatcaaatt 
    1321 tatcaagagc catttaaaaa tctgaaaaca ggaaagtatg caagaatgaa gggtgcccac 
    1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga aagcatagta 
    1441 atatggggaa agactcctaa atttagactg cccatacaaa aagaaacatg ggaaaca
//
last modified: Tue May 31 10:56 2022


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