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LOCUS JX123594 1002 bp RNA linear VRL 09-MAR-2013
DEFINITION HIV-1 isolate LDS140B_520080302202 from Uganda pol protein (pol)
gene, partial cds
ACCESSION JX123594
VERSION JX123594.1 GI:459171267
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1002)
Show all sequences for reference 1
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Antiretroviral prophylaxis for HIV prevention in heterosexual men
and women
JOURNAL N. Engl. J. Med. 367 (5), 399-410 (2012)
PUBMED 22784037
REFERENCE 2 (bases 1 to 1002)
Show all sequences for reference 2
AUTHORS Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
Celum,C.
CONSRTM Partners PrEP Study Team
TITLE Direct Submission
JOURNAL Submitted (31-MAY-2012) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98105, USA
FEATURES Location/Qualifiers
source 1..1002
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="LDS140B_520080302202"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Uganda"
/collection_date="2011"
gene <1..>1002
/gene="pol"
CDS <1..>1002
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AGG40558.1"
/db_xref="GI:459171268"
/translation="QITLWQRPLVTVKVGGQLKEALLDTGADDTVLEDINLPGKWKPK
MIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISP
IETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFA
IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
DENFRKYTAFTIPSTNNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPDI
IIYQYMDDLYVGSDLEIGQHRAKVEELRAHLLSWGLTTPDKKHQKEPPFLWMGYELH"
BASE COUNT 394 a 163 c 203 g 236 t 6 other
ORIGIN
1 gtcaaatcac tctttggcar cgacctcttg tcacagtaaa agtaggggga cagctaaaag
61 aagctctatt agatacagga gcagatgata cagtgttaga agacataaat ttgccaggaa
121 aatggaaacc aaaaatgata gggggaattg gaggtttcat caaagtaaaa cagtatgatc
181 agatactcat agaaatttgt ggaaaaaagg ctataggtac agtattggta ggacctacac
241 ctgtcaacat aattggaaga aatatgttga cccagattgg atgtacttta aatttcccaa
301 ttagtcctat tgaaactgta ccagtaaaat taaagccagg aatggatggs ccaagggtta
361 aacaatggcc attgacagaa gaaaagataa aagcattaac agaaatttgt acagaaatgg
421 araaggaagg aaaaatttca aaaattgggc ctgaaaaccc atacaatact ccaatatttg
481 ctataaaraa raaagatagc actaaatgga gaaaattagt agatttcaga gagctcaata
541 aaagaactca agatttttgg gaagttcaat taggaatacc gcatccagcg ggcttaaaaa
601 aaaaaaaatc agtaacagta ctggatgtgg gggatgcata tttttcagtt cctttagatg
661 aaaactttag aaagtataca gcattcacca tacctagtac aaacaatgag acaccaggaa
721 ccaggtacca gtacaatgtg cttccacagg gatggaaggg atcaccagca atattccaga
781 gtagcatgac aaaaatctta garcccttca gatcaaaaaa tccagacata attatctatc
841 aatacatgga tgacttgtat gtaggatctg atttagaaat aggacaacat agagcaaaag
901 tagaagagtt aagagctcat ctattgagct gggggcttac tacaccagac aaaaaacatc
961 agaaagaacc cccttttctt tggatgggat atgaactcca tc
//
last modified: Tue May 31 10:56 2022