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LOCUS	    JX123594		    1002 bp    RNA     linear	VRL 09-MAR-2013
DEFINITION  HIV-1 isolate LDS140B_520080302202 from Uganda pol protein (pol)
	    gene, partial cds
ACCESSION   JX123594
VERSION     JX123594.1 GI:459171267
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1002)
            Show all sequences for reference 1
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Antiretroviral prophylaxis for HIV prevention in heterosexual men
	    and women
  JOURNAL   N. Engl. J. Med. 367 (5), 399-410 (2012)
  PUBMED    22784037
REFERENCE   2 (bases 1 to 1002)
            Show all sequences for reference 2
  AUTHORS   Baeten,J.M., Donnell,D., Ndase,P., Mugo,N.R., Campbell,J.D.,
	    Wangisi,J., Tappero,J.W., Bukusi,E.A., Cohen,C.R., Katabira,E.,
	    Ronald,A., Tumwesigye,E., Were,E., Fife,K.H., Kiarie,J.,
	    Farquhar,C., John-Stewart,G., Kakia,A., Odoyo,J., Mucunguzi,A.,
	    Nakku-Joloba,E., Twesigye,R., Ngure,K., Apaka,C., Tamooh,H.,
	    Gabona,F., Mujugira,A., Panteleeff,D., Thomas,K.K., Kidoguchi,L.,
	    Krows,M., Revall,J., Morrison,S., Haugen,H., Emmanuel-Ogier,M.,
	    Ondrejcek,L., Coombs,R.W., Frenkel,L., Hendrix,C., Bumpus,N.N.,
	    Bangsberg,D., Haberer,J.E., Stevens,W.S., Lingappa,J.R. and
	    Celum,C.
  CONSRTM   Partners PrEP Study Team
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAY-2012) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98105, USA
FEATURES             Location/Qualifiers
     source	     1..1002
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="LDS140B_520080302202"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Uganda"
		     /collection_date="2011"
     gene	     <1..>1002
		     /gene="pol"
     CDS	     <1..>1002
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AGG40558.1"
		     /db_xref="GI:459171268"
		     /translation="QITLWQRPLVTVKVGGQLKEALLDTGADDTVLEDINLPGKWKPK
		     MIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISP
		     IETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFA
		     IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPL
		     DENFRKYTAFTIPSTNNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPDI
		     IIYQYMDDLYVGSDLEIGQHRAKVEELRAHLLSWGLTTPDKKHQKEPPFLWMGYELH"
BASE COUNT	394 a	 163 c	  203 g    236 t      6 other
ORIGIN
       1 gtcaaatcac tctttggcar cgacctcttg tcacagtaaa agtaggggga cagctaaaag 
      61 aagctctatt agatacagga gcagatgata cagtgttaga agacataaat ttgccaggaa 
     121 aatggaaacc aaaaatgata gggggaattg gaggtttcat caaagtaaaa cagtatgatc 
     181 agatactcat agaaatttgt ggaaaaaagg ctataggtac agtattggta ggacctacac 
     241 ctgtcaacat aattggaaga aatatgttga cccagattgg atgtacttta aatttcccaa 
     301 ttagtcctat tgaaactgta ccagtaaaat taaagccagg aatggatggs ccaagggtta 
     361 aacaatggcc attgacagaa gaaaagataa aagcattaac agaaatttgt acagaaatgg 
     421 araaggaagg aaaaatttca aaaattgggc ctgaaaaccc atacaatact ccaatatttg 
     481 ctataaaraa raaagatagc actaaatgga gaaaattagt agatttcaga gagctcaata 
     541 aaagaactca agatttttgg gaagttcaat taggaatacc gcatccagcg ggcttaaaaa 
     601 aaaaaaaatc agtaacagta ctggatgtgg gggatgcata tttttcagtt cctttagatg 
     661 aaaactttag aaagtataca gcattcacca tacctagtac aaacaatgag acaccaggaa 
     721 ccaggtacca gtacaatgtg cttccacagg gatggaaggg atcaccagca atattccaga 
     781 gtagcatgac aaaaatctta garcccttca gatcaaaaaa tccagacata attatctatc 
     841 aatacatgga tgacttgtat gtaggatctg atttagaaat aggacaacat agagcaaaag 
     901 tagaagagtt aagagctcat ctattgagct gggggcttac tacaccagac aaaaaacatc 
     961 agaaagaacc cccttttctt tggatgggat atgaactcca tc
//
last modified: Tue May 31 10:56 2022


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